HL_3J7R_047

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCGCGGCGG

Length

9 nucleotides

Bulged bases

3J7R|1|5|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7R_047 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.349

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

3J7R|1|5|C|3667
3J7R|1|5|C|3668
3J7R|1|5|G|3669
3J7R|1|5|C|3670
3J7R|1|5|G|3671
3J7R|1|5|G|3672
3J7R|1|5|C|3673
3J7R|1|5|G|3674
3J7R|1|5|G|3675

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL2

Chain N

Ribosomal protein eL15