HL_3J7R_069

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

3J7R|1|5|C|5027

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7R_069 not in the Motif Atlas

Geometric match to HL_8C3A_018

Geometric discrepancy: 0.3478

The information below is about HL_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

3J7R|1|5|C|5021
3J7R|1|5|U|5022
3J7R|1|5|C|5023
3J7R|1|5|C|5024
3J7R|1|5|C|5025
3J7R|1|5|U|5026
3J7R|1|5|C|5027
3J7R|1|5|G|5028

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain SI

Ribosomal protein eS8

Chain U

Ribosomal protein eL22