Motif HL_84570.1 Version HL_84570.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_018 | 5TBW | 0.1293 | 1 | 1 | LSU rRNA | G | 763 | U | 764 | U | 766 | U | 767 | C | 768 | cWW | cwW | |
| 2 | HL_8C3A_018 | 8C3A | 0.0000 | 1 | 1 | LSU rRNA | G | 759 | U | 760 | U | 762 | U | 763 | C | 764 | cWW | cwW | |
| 3 | HL_5J7L_214 | 5J7L | 0.3293 | 2 | DA | LSU rRNA | C | 1727 | C | 1728 | C | 1730 | G | 1731 | G | 1733 | cWW | ncWW | |
| 4 | HL_5J7L_200 | 5J7L | 0.3451 | 2 | Other HL | DA | LSU rRNA | C | 2795 | U | 2796 | U | 2798 | A | 2799 | G | 2801 | cWW | ncWW |
| 5 | HL_8VTW_008 | 8VTW | 0.4052 | 2 | Single bulged U (H) | 1A | LSU rRNA | G | 271|||I | C | 271|||J | U | 271|||L | G | 271|||M | C | 271|||O | cWW | ncWW |
| 6 | HL_2Y9H_005 | 2Y9H | 0.3807 | 3 | J | RNA (19-mer) | A | 10 | C | 11 | G | 12 | G | 16 | U | 17 | cWW | ncWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCUUC | 1 |
| GUGUUC | 1 |
| CCUCGCG | 1 |
| CUUUAAG | 1 |
| GCUUGUC | 1 |
| ACGCGUGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCUU | 1 |
| UGUU | 1 |
| CUCGC | 1 |
| UUUAA | 1 |
| CUUGU | 1 |
| CGCGUG | 1 |
- Annotations
-
- (4)
- Other HL (1)
- Single bulged U (H) (1)
- Basepair signature
- cWW-cWW-F
- Heat map statistics
- Min 0.13 | Avg 0.30 | Max 0.46
Coloring options: