HL_3J7R_089

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCAGCCGC

Length

8 nucleotides

Bulged bases

3J7R|1|S2|G|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7R_089 not in the Motif Atlas

Geometric match to HL_6D12_001

Geometric discrepancy: 0.2686

The information below is about HL_6D12_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

3J7R|1|S2|G|617
3J7R|1|S2|C|618
3J7R|1|S2|A|619
3J7R|1|S2|G|620
3J7R|1|S2|C|621
3J7R|1|S2|C|622
3J7R|1|S2|G|623
3J7R|1|S2|C|624

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain S4

Messenger RNA

Chain SX

Ribosomal protein uS12

Chain Se

Ribosomal protein eS30