HL_3J7R_099
3D structure
- PDB id
- 3J7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the translating mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGACUCAACACG
- Length
- 12 nucleotides
- Bulged bases
- 3J7R|1|S2|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J7R_099 not in the Motif Atlas
- Geometric match to HL_4TUE_033
- Geometric discrepancy: 0.3979
- The information below is about HL_4TUE_033
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
3J7R|1|S2|U|1244
3J7R|1|S2|G|1245
3J7R|1|S2|A|1246
3J7R|1|S2|C|1247
3J7R|1|S2|U|1248
3J7R|1|S2|C|1249
3J7R|1|S2|A|1250
3J7R|1|S2|A|1251
3J7R|1|S2|C|1252
3J7R|1|S2|A|1253
3J7R|1|S2|C|1254
3J7R|1|S2|G|1255
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain S5
- Transfer RNA; tRNA
- Chain S6
- Transfer RNA; tRNA
- Chain SQ
- Ribosomal protein uS9
- Chain SS
- Ribosomal protein uS13
- Chain SU
- Ribosomal protein uS10
- Chain Sd
- Ribosomal protein uS14
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