RNA 3D Hub //

Motif HL_93616.2 Version HL_93616.2 of this group appears in releases 3.91 to 3.98

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 81-82-77-8
1 HL_2ZUE_0012ZUE0.32424tRNA D-loopBtRNA-ArgU913A914G915C916C917A917|||AA921G922cWWcWS
2 HL_4TUE_0334TUE0.25403tRNA D-loopQV tRNAC12A13G14C15C16U17A21G22cWWcWS
3 HL_5E81_2115E810.00003tRNA D-loop2K tRNAC13A14G15C16C17C18A22G23cWWcWS
4 HL_9DFC_1039DFC0.127031x tRNAC13A14G15C16C17U17|||AA21G22cWWcWS
5 HL_6CFJ_1066CFJ0.14913tRNA D-loop1x tRNAC13A14G15C16C17U17|||AA21G22cWWcWS
6 HL_1J1U_0011J1U0.24503tRNA D-loopBtRNA(Tyr)C513A514G515C516C517U518A522G523cWWncWS
7 HL_4V9Q_2134V9Q0.23823tRNA D-loopDV tRNAC13A14G15C16C17U17|||AA21G22cWWncSH
8 HL_4WT8_2154WT80.37063tRNA D-loopD4 tRNAC13A14G15C16C17U18A22G23cWWncWS

3D structures

Complete motif including flanking bases
SequenceCounts
CAGCCUGGUAG6
UAGCCAGGACAG1
CAGCCCGGUAG1
Non-Watson-Crick part of the motif
SequenceCounts
AGCCUGGUA6
AGCCAGGACA1
AGCCCGGUA1

Release history

Release3.913.923.933.943.953.963.973.98
Date2024-12-042025-01-012025-01-292025-02-262025-03-262025-04-232025-05-212025-06-18
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tRNA D-loop (7)
  • (1)
    • Basepair signature
    cWW-cWS-F-F-F-F
    Heat map statistics
    Min 0.10 | Avg 0.26 | Max 0.46
    Help

    Coloring options:

    HL_2ZUE_001:HL_2ZUE_001 = 0HL_2ZUE_001:HL_4TUE_033 = 0.3537HL_2ZUE_001:HL_5E81_211 = 0.3242HL_2ZUE_001:HL_9DFC_103 = 0.3433HL_2ZUE_001:HL_6CFJ_106 = 0.3182HL_2ZUE_001:HL_1J1U_001 = 0.2467HL_2ZUE_001:HL_4V9Q_213 = 0.3387HL_2ZUE_001:HL_4WT8_215 = 0.4638HL_4TUE_033:HL_2ZUE_001 = 0.3537HL_4TUE_033:HL_4TUE_033 = 0HL_4TUE_033:HL_5E81_211 = 0.254HL_4TUE_033:HL_9DFC_103 = 0.2833HL_4TUE_033:HL_6CFJ_106 = 0.2799HL_4TUE_033:HL_1J1U_001 = 0.314HL_4TUE_033:HL_4V9Q_213 = 0.3294HL_4TUE_033:HL_4WT8_215 = 0.4633HL_5E81_211:HL_2ZUE_001 = 0.3242HL_5E81_211:HL_4TUE_033 = 0.254HL_5E81_211:HL_5E81_211 = 0HL_5E81_211:HL_9DFC_103 = 0.127HL_5E81_211:HL_6CFJ_106 = 0.1491HL_5E81_211:HL_1J1U_001 = 0.245HL_5E81_211:HL_4V9Q_213 = 0.2382HL_5E81_211:HL_4WT8_215 = 0.3706HL_9DFC_103:HL_2ZUE_001 = 0.3433HL_9DFC_103:HL_4TUE_033 = 0.2833HL_9DFC_103:HL_5E81_211 = 0.127HL_9DFC_103:HL_9DFC_103 = 0HL_9DFC_103:HL_6CFJ_106 = 0.1047HL_9DFC_103:HL_1J1U_001 = 0.232HL_9DFC_103:HL_4V9Q_213 = 0.2426HL_9DFC_103:HL_4WT8_215 = 0.386HL_6CFJ_106:HL_2ZUE_001 = 0.3182HL_6CFJ_106:HL_4TUE_033 = 0.2799HL_6CFJ_106:HL_5E81_211 = 0.1491HL_6CFJ_106:HL_9DFC_103 = 0.1047HL_6CFJ_106:HL_6CFJ_106 = 0HL_6CFJ_106:HL_1J1U_001 = 0.2457HL_6CFJ_106:HL_4V9Q_213 = 0.2522HL_6CFJ_106:HL_4WT8_215 = 0.3891HL_1J1U_001:HL_2ZUE_001 = 0.2467HL_1J1U_001:HL_4TUE_033 = 0.314HL_1J1U_001:HL_5E81_211 = 0.245HL_1J1U_001:HL_9DFC_103 = 0.232HL_1J1U_001:HL_6CFJ_106 = 0.2457HL_1J1U_001:HL_1J1U_001 = 0HL_1J1U_001:HL_4V9Q_213 = 0.2692HL_1J1U_001:HL_4WT8_215 = 0.4353HL_4V9Q_213:HL_2ZUE_001 = 0.3387HL_4V9Q_213:HL_4TUE_033 = 0.3294HL_4V9Q_213:HL_5E81_211 = 0.2382HL_4V9Q_213:HL_9DFC_103 = 0.2426HL_4V9Q_213:HL_6CFJ_106 = 0.2522HL_4V9Q_213:HL_1J1U_001 = 0.2692HL_4V9Q_213:HL_4V9Q_213 = 0HL_4V9Q_213:HL_4WT8_215 = 0.3912HL_4WT8_215:HL_2ZUE_001 = 0.4638HL_4WT8_215:HL_4TUE_033 = 0.4633HL_4WT8_215:HL_5E81_211 = 0.3706HL_4WT8_215:HL_9DFC_103 = 0.386HL_4WT8_215:HL_6CFJ_106 = 0.3891HL_4WT8_215:HL_1J1U_001 = 0.4353HL_4WT8_215:HL_4V9Q_213 = 0.3912HL_4WT8_215:HL_4WT8_215 = 0HL_2ZUE_001HL_4TUE_033HL_5E81_211HL_9DFC_103HL_6CFJ_106HL_1J1U_001HL_4V9Q_213HL_4WT8_215Discrepancy0.000.100.200.300.40
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