HL_3J7R_106

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

3J7R|1|S2|U|1621, 3J7R|1|S2|U|1622, 3J7R|1|S2|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7R_106 not in the Motif Atlas

Homologous match to HL_4V88_219

Geometric discrepancy: 0.2708

The information below is about HL_4V88_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

3J7R|1|S2|A|1614
3J7R|1|S2|U|1615
3J7R|1|S2|U|1616
3J7R|1|S2|G|1617
3J7R|1|S2|C|1618
3J7R|1|S2|A|1619
3J7R|1|S2|A|1620
3J7R|1|S2|U|1621
3J7R|1|S2|U|1622
3J7R|1|S2|A|1623
3J7R|1|S2|U|1624
3J7R|1|S2|U|1625

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SP

Ribosomal protein uS19

Chain SS

Ribosomal protein uS13

Chain Sd

Ribosomal protein uS14