Motif HL_03273.1 Version HL_03273.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_045 | 7A0S | 0.6760 | 4 | X | LSU rRNA | G | 1767 | U | 1768 | U | 1769 | U | 1770 | C | 1773 | A | 1774 | A | 1776 | U | 1778 | C | 1779 | cWW | ncwW | tWH |
| 2 | HL_8C3A_224 | 8C3A | 0.0000 | 3 | CM | SSU rRNA | A | 1537 | U | 1538 | U | 1539 | G | 1540 | U | 1541 | A | 1542 | A | 1543 | U | 1547 | U | 1548 | cWW | ncWH | tWH |
| 3 | HL_4V88_219 | 4V88 | 0.0967 | 3 | A6 | SSU rRNA | A | 1550 | U | 1551 | U | 1552 | G | 1553 | U | 1554 | A | 1555 | A | 1556 | U | 1560 | U | 1561 | cWW | ncWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUACCAAAAUC | 1 |
| AUUGUAAUUGUU | 1 |
| AUUGUAAUUAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUACCAAAAU | 1 |
| UUGUAAUUGU | 1 |
| UUGUAAUUAU | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.32 | Max 0.68
Coloring options: