HL_3J7R_110

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGGGUAG

Length

8 nucleotides

Bulged bases

3J7R|1|S5|G|18, 3J7R|1|S5|G|19, 3J7R|1|S5|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_21557.1

Basepair signature

cWW-cWS-tSW

Number of instances in this motif group

5

Unit IDs

3J7R|1|S5|C|13
3J7R|1|S5|A|14
3J7R|1|S5|G|15
3J7R|1|S5|G|18
3J7R|1|S5|G|19
3J7R|1|S5|U|20
3J7R|1|S5|A|21
3J7R|1|S5|G|22

Current chains

Chain S5

A/P tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA