Motif HL_21557.1 Version HL_21557.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5HR7_004 | 5HR7 | 0.0600 | 5 | D | U | 13 | A | 14 | G | 15 | C | 20 | A | 21 | G | 22 | cWW | cWS | tSW |
| 2 | HL_5HR6_001 | 5HR6 | 0.0000 | 5 | C | U | 12 | A | 13 | G | 14 | C | 19 | A | 21 | G | 22 | cWW | cWS | tSW |
| 3 | HL_2DER_004 | 2DER | 0.2037 | 5 | D | U | 13 | A | 14 | G | 15 | C | 20 | A | 21 | G | 22 | cWW | cWS | tSW |
| 4 | HL_2CV1_004 | 2CV1 | 0.5756 | 4 | D | U | 513 | A | 514 | G | 515 | U | 520 | A | 521 | G | 522 | cWW | cWS | ntSH |
| 5 | HL_3J7R_110 | 3J7R | 0.7881 | 2 | S5 | C | 13 | A | 14 | G | 15 | U | 20 | A | 21 | G | 22 | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGAGGCCCAG | 3 |
| UAGCGGUUAG | 1 |
| CAGGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAGGCCCA | 3 |
| AGCGGUUA | 1 |
| AGGGUA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-cWS-tSW
- Heat map statistics
- Min 0.06 | Avg 0.41 | Max 0.81
Coloring options: