HL_3J7R_111

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGAAAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56406.1

Basepair signature

cWW-R-R-R-R

Number of instances in this motif group

28

Unit IDs

3J7R|1|S5|U|32
3J7R|1|S5|U|33
3J7R|1|S5|G|34
3J7R|1|S5|A|35
3J7R|1|S5|A|36
3J7R|1|S5|A|37
3J7R|1|S5|A|38

Current chains

Chain S5

A/P tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain S4

Messenger RNA

Chain SX

Ribosomal protein uS12