Motif HL_56406.1 Version HL_56406.1 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7	2-6	4-5
1	HL_3OX0_001	3OX0	0.7749	1	A	Domain II of glycine riboswitch	G	17	U	19	U	20	A	21	A	22	U	23	C	24	cWW
2	HL_5AN9_022	5AN9	0.7497	1	N	LSU rRNA	A	3230	C	3232	A	3233	G	3234	A	3235	A	3236	U	3237	cWW
3	HL_4V88_176	4V88	0.7821	1	A5	LSU rRNA	A	2897	C	2899	A	2900	G	2901	A	2902	A	2903	U	2904	cWW
4	HL_4V91_063	4V91	0.7909	1	1	LSU rRNA	A	2897	C	2899	A	2900	G	2901	A	2902	A	2903	U	2904	cWW
5	HL_3J79_062	3J79	0.7514	1	A	LSU rRNA	C	3256	C	3258	A	3259	G	3260	A	3261	A	3262	G	3263	cWW
6	HL_5AJ0_066	5AJ0	0.7209	1	A2	LSU rRNA	A	4436	C	4438	A	4439	G	4440	A	4441	A	4442	U	4443	cWW
7	HL_4V8P_222	4V8P	0.6922	1	F1	LSU rRNA	A	2885	C	2887	A	2888	G	2889	A	2890	A	2891	U	2892	cWW
8	HL_3J9W_097	3J9W	0.6276	1	BA	LSU rRNA	U	2557	U	2559	A	2560	G	2561	U	2562	C	2563	G	2564	cWW
9	HL_5J7L_194	5J7L	0.6689	1	DA	LSU rRNA	U	2528	A	2530	A	2531	G	2532	U	2533	A	2534	G	2535	cWW
10	HL_5FDU_060	5FDU	0.6400	1	1A	LSU rRNA	U	2540	A	2542	A	2543	G	2544	A	2545	A	2546	G	2547	cWW
11	HL_4IOA_060	4IOA	0.6859	1	X	LSU rRNA	U	2507	A	2509	A	2510	G	2511	A	2512	A	2513	G	2514	cWW
12	HL_4V9F_063	4V9F	0.7099	1	0	LSU rRNA	U	2563	C	2565	A	2566	G	2567	A	2568	A	2569	G	2570	cWW
13	HL_4V19_034	4V19	0.6102	1	A	LSU rRNA	U	1349	C	1351	A	1352	G	1353	C	1354	C	1355	G	1356	cWW
14	HL_3J7Y_034	3J7Y	0.5378	1	A	LSU rRNA	U	3015	C	3017	A	3018	G	3019	C	3020	C	3021	G	3022	ncWW
15	HL_3J7Y_035	3J7Y	0.2913	0	A	LSU rRNA	U	3038	U	3039	G	3040	U	3041	U	3042	C	3043	A	3044	cWW
16	HL_3J9W_098	3J9W	0.1894	0	BA	LSU rRNA	C	2580	U	2581	G	2582	U	2583	U	2584	C	2585	G	2586	cWW
17	HL_3JCS_056	3JCS	0.0000	0	2	LSU rRNA	U	1359	U	1360	G	1361	U	1362	U	1363	C	1364	A	1365	cWW
18	HL_5AJ0_067	5AJ0	0.1925	0	A2	LSU rRNA	U	4459	U	4460	G	4461	U	4462	U	4463	C	4464	A	4465	cWW
19	HL_4V8P_223	4V8P	0.2079	0	F1	LSU rRNA	U	2908	U	2909	G	2910	U	2911	U	2912	C	2913	A	2914	cWW
20	HL_3J79_063	3J79	0.1546	0	A	LSU rRNA	U	3279	U	3280	G	3281	U	3282	U	3283	C	3284	A	3285	cWW
21	HL_4V88_177	4V88	0.2044	0	A5	LSU rRNA	U	2920	U	2921	G	2922	U	2923	U	2924	C	2925	A	2926	cWW
22	HL_4V91_064	4V91	0.1920	0	1	LSU rRNA	U	2920	U	2921	G	2922	U	2923	U	2924	C	2925	A	2926	cWW
23	HL_4IOA_061	4IOA	0.2468	0	X	LSU rRNA	C	2530	U	2531	G	2532	U	2533	U	2534	C	2535	G	2536	cWW
24	HL_4V19_035	4V19	0.2592	0	A	LSU rRNA	U	1372	U	1373	G	1374	U	1375	U	1376	C	1377	A	1378	cWW
25	HL_5AN9_023	5AN9	0.2988	0	N	LSU rRNA	U	3253	U	3254	G	3255	U	3256	U	3257	C	3258	A	3259	cWW		ncSH
26	HL_1FJG_002	1FJG	0.6174	0	A	SSU rRNA	G	80	U	81	U	82	U	83	U	84	A	88	C	89	cWW	ntSH
27	HL_5A8L_010	5A8L	0.6412	0	P	P-SITE TRNA	U	32	U	33	A	34	G	35	G	36	A	37	A	38	cWW
28	HL_3J7R_111	3J7R	0.7804	0	S5	tRNA	U	32	U	33	G	34	A	35	A	36	A	37	A	38	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUGUUCA	9
AGCAGAAU	5
UGAAGAAG	2
UGCAGCCG	2
CUGUUCG	2
GUUUAAUC	1
CGCAGAAG	1
UGUAGUCG	1
UGAAGUAG	1
UGCAGAAG	1
GUUUUAC	1
UUAGGAA	1
UUGAAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGUUC	11
GCAGAA	7
GAAGAA	2
GCAGCC	2
UUUAAU	1
GUAGUC	1
GAAGUA	1
UUUUA	1
UAGGA	1
UGAAA	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (28)
Basepair signature: cWW-R-R-R-R
Heat map statistics: Min 0.10 | Avg 0.57 | Max 0.96

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