Motif HL_56406.1 Version HL_56406.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3OX0_001 | 3OX0 | 0.7749 | 1 | A | Glycine riboswitch | G | 17 | U | 19 | U | 20 | A | 21 | A | 22 | U | 23 | C | 24 | cWW | |||
| 2 | HL_5AN9_022 | 5AN9 | 0.7497 | 1 | N | LSU rRNA | A | 3230 | C | 3232 | A | 3233 | G | 3234 | A | 3235 | A | 3236 | U | 3237 | cWW | |||
| 3 | HL_4V88_176 | 4V88 | 0.7821 | 1 | A5 | LSU rRNA | A | 2897 | C | 2899 | A | 2900 | G | 2901 | A | 2902 | A | 2903 | U | 2904 | cWW | |||
| 4 | HL_4V91_063 | 4V91 | 0.7909 | 1 | 1 | LSU rRNA | A | 2897 | C | 2899 | A | 2900 | G | 2901 | A | 2902 | A | 2903 | U | 2904 | cWW | |||
| 5 | HL_3J79_062 | 3J79 | 0.7514 | 1 | A | LSU rRNA | C | 3256 | C | 3258 | A | 3259 | G | 3260 | A | 3261 | A | 3262 | G | 3263 | cWW | |||
| 6 | HL_5AJ0_066 | 5AJ0 | 0.7209 | 1 | A2 | LSU rRNA | A | 4436 | C | 4438 | A | 4439 | G | 4440 | A | 4441 | A | 4442 | U | 4443 | cWW | |||
| 7 | HL_4V8P_222 | 4V8P | 0.6922 | 1 | F1 | LSU rRNA | A | 2885 | C | 2887 | A | 2888 | G | 2889 | A | 2890 | A | 2891 | U | 2892 | cWW | |||
| 8 | HL_3J9W_097 | 3J9W | 0.6276 | 1 | BA | LSU rRNA | U | 2557 | U | 2559 | A | 2560 | G | 2561 | U | 2562 | C | 2563 | G | 2564 | cWW | |||
| 9 | HL_5J7L_194 | 5J7L | 0.6689 | 1 | GNRA variation | DA | LSU rRNA | U | 2528 | A | 2530 | A | 2531 | G | 2532 | U | 2533 | A | 2534 | G | 2535 | cWW | ||
| 10 | HL_5FDU_060 | 5FDU | 0.6400 | 1 | 1A | LSU rRNA | U | 2540 | A | 2542 | A | 2543 | G | 2544 | A | 2545 | A | 2546 | G | 2547 | cWW | |||
| 11 | HL_4IOA_060 | 4IOA | 0.6859 | 1 | GNRA variation (H) | X | LSU rRNA | U | 2507 | A | 2509 | A | 2510 | G | 2511 | A | 2512 | A | 2513 | G | 2514 | cWW | ||
| 12 | HL_4V9F_063 | 4V9F | 0.7099 | 1 | GNRA variation | 0 | LSU rRNA | U | 2563 | C | 2565 | A | 2566 | G | 2567 | A | 2568 | A | 2569 | G | 2570 | cWW | ||
| 13 | HL_4V19_034 | 4V19 | 0.6102 | 1 | GNRA variation (H) | A | LSU rRNA | U | 1349 | C | 1351 | A | 1352 | G | 1353 | C | 1354 | C | 1355 | G | 1356 | cWW | ||
| 14 | HL_3J7Y_034 | 3J7Y | 0.5378 | 1 | A | LSU rRNA | U | 3015 | C | 3017 | A | 3018 | G | 3019 | C | 3020 | C | 3021 | G | 3022 | ncWW | |||
| 15 | HL_3J7Y_035 | 3J7Y | 0.2913 | 0 | LSU A loop (H) | A | LSU rRNA | U | 3038 | U | 3039 | G | 3040 | U | 3041 | U | 3042 | C | 3043 | A | 3044 | cWW | ||
| 16 | HL_3J9W_098 | 3J9W | 0.1894 | 0 | LSU A loop (H) | BA | LSU rRNA | C | 2580 | U | 2581 | G | 2582 | U | 2583 | U | 2584 | C | 2585 | G | 2586 | cWW | ||
| 17 | HL_3JCS_056 | 3JCS | 0.0000 | 0 | 2 | LSU rRNA | U | 1359 | U | 1360 | G | 1361 | U | 1362 | U | 1363 | C | 1364 | A | 1365 | cWW | |||
| 18 | HL_5AJ0_067 | 5AJ0 | 0.1925 | 0 | A2 | LSU rRNA | U | 4459 | U | 4460 | G | 4461 | U | 4462 | U | 4463 | C | 4464 | A | 4465 | cWW | |||
| 19 | HL_4V8P_223 | 4V8P | 0.2079 | 0 | F1 | LSU rRNA | U | 2908 | U | 2909 | G | 2910 | U | 2911 | U | 2912 | C | 2913 | A | 2914 | cWW | |||
| 20 | HL_3J79_063 | 3J79 | 0.1546 | 0 | A | LSU rRNA | U | 3279 | U | 3280 | G | 3281 | U | 3282 | U | 3283 | C | 3284 | A | 3285 | cWW | |||
| 21 | HL_4V88_177 | 4V88 | 0.2044 | 0 | A5 | LSU rRNA | U | 2920 | U | 2921 | G | 2922 | U | 2923 | U | 2924 | C | 2925 | A | 2926 | cWW | |||
| 22 | HL_4V91_064 | 4V91 | 0.1920 | 0 | 1 | LSU rRNA | U | 2920 | U | 2921 | G | 2922 | U | 2923 | U | 2924 | C | 2925 | A | 2926 | cWW | |||
| 23 | HL_4IOA_061 | 4IOA | 0.2468 | 0 | LSU A loop (H) | X | LSU rRNA | C | 2530 | U | 2531 | G | 2532 | U | 2533 | U | 2534 | C | 2535 | G | 2536 | cWW | ||
| 24 | HL_4V19_035 | 4V19 | 0.2592 | 0 | LSU A loop (H) | A | LSU rRNA | U | 1372 | U | 1373 | G | 1374 | U | 1375 | U | 1376 | C | 1377 | A | 1378 | cWW | ||
| 25 | HL_5AN9_023 | 5AN9 | 0.2988 | 0 | N | LSU rRNA | U | 3253 | U | 3254 | G | 3255 | U | 3256 | U | 3257 | C | 3258 | A | 3259 | cWW | ncSH | ||
| 26 | HL_1FJG_002 | 1FJG | 0.6174 | 0 | A | SSU rRNA | G | 80 | U | 81 | U | 82 | U | 83 | U | 84 | A | 88 | C | 89 | cWW | ntSH | ||
| 27 | HL_5A8L_010 | 5A8L | 0.6412 | 0 | P | P-SITE TRNA | U | 32 | U | 33 | A | 34 | G | 35 | G | 36 | A | 37 | A | 38 | cWW | |||
| 28 | HL_3J7R_111 | 3J7R | 0.7804 | 0 | S5 | tRNA | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUGUUCA | 9 |
| AGCAGAAU | 5 |
| UGAAGAAG | 2 |
| UGCAGCCG | 2 |
| CUGUUCG | 2 |
| GUUUAAUC | 1 |
| CGCAGAAG | 1 |
| UGUAGUCG | 1 |
| UGAAGUAG | 1 |
| UGCAGAAG | 1 |
| GUUUUAC | 1 |
| UUAGGAA | 1 |
| UUGAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGUUC | 11 |
| GCAGAA | 7 |
| GAAGAA | 2 |
| GCAGCC | 2 |
| UUUAAU | 1 |
| GUAGUC | 1 |
| GAAGUA | 1 |
| UUUUA | 1 |
| UAGGA | 1 |
| UGAAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (20)
- LSU A loop (H) (4)
- GNRA variation (H) (2)
- GNRA variation (2)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.10 | Avg 0.57 | Max 0.96
Coloring options: