HL_3J7Z_011

3D structure

PDB id

3J7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmCL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

3J7Z|1|A|G|329, 3J7Z|1|A|A|330, 3J7Z|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7Z_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0987

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

3J7Z|1|A|G|327
3J7Z|1|A|U|328
3J7Z|1|A|G|329
3J7Z|1|A|A|330
3J7Z|1|A|C|331
3J7Z|1|A|A|332
3J7Z|1|A|G|333
3J7Z|1|A|C|334
3J7Z|1|A|C|335

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24