3D structure

PDB id
3J7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli 50S subunit with ErmCL nascent chain
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UGUUGAAAAA
Length
10 nucleotides
Bulged bases
3J7Z|1|A|U|747, 3J7Z|1|A|A|751
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3J7Z_022 not in the Motif Atlas
Homologous match to HL_4WF9_023
Geometric discrepancy: 0.0966
The information below is about HL_4WF9_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

3J7Z|1|A|U|744
3J7Z|1|A|G|745
3J7Z|1|A|U|746
3J7Z|1|A|U|747
3J7Z|1|A|G|748
3J7Z|1|A|A|749
3J7Z|1|A|A|750
3J7Z|1|A|A|751
3J7Z|1|A|A|752
3J7Z|1|A|A|753

Current chains

Chain A
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain 2
50S ribosomal protein L34
Chain D
50S ribosomal protein L3
Chain S
50S ribosomal protein L22

Coloring options:


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