HL_3J7Z_050

3D structure

PDB id

3J7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmCL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

3J7Z|1|A|A|2030, 3J7Z|1|A|A|2031, 3J7Z|1|A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7Z_050 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1198

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

3J7Z|1|A|G|2027
3J7Z|1|A|U|2028
3J7Z|1|A|G|2029
3J7Z|1|A|A|2030
3J7Z|1|A|A|2031
3J7Z|1|A|G|2032
3J7Z|1|A|A|2033
3J7Z|1|A|U|2034
3J7Z|1|A|G|2035
3J7Z|1|A|C|2036

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain R

50S ribosomal protein L21