HL_3J7Z_054

3D structure

PDB id

3J7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmCL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

3J7Z|1|A|A|2268, 3J7Z|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J7Z_054 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0618

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

3J7Z|1|A|C|2264
3J7Z|1|A|U|2265
3J7Z|1|A|A|2266
3J7Z|1|A|A|2267
3J7Z|1|A|A|2268
3J7Z|1|A|G|2269
3J7Z|1|A|A|2270
3J7Z|1|A|G|2271
3J7Z|1|A|U|2272
3J7Z|1|A|A|2273
3J7Z|1|A|A|2274
3J7Z|1|A|C|2275
3J7Z|1|A|G|2276

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27