HL_3J81_011

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

3J81|1|2|A|415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J81_011 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.2219

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

3J81|1|2|C|413
3J81|1|2|C|414
3J81|1|2|A|415
3J81|1|2|A|416
3J81|1|2|G|417
3J81|1|2|G|418

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6