HL_3J81_013

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

3J81|1|2|A|491, 3J81|1|2|U|492, 3J81|1|2|U|493, 3J81|1|2|C|494

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J81_013 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.2152

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

3J81|1|2|C|490
3J81|1|2|A|491
3J81|1|2|U|492
3J81|1|2|U|493
3J81|1|2|C|494
3J81|1|2|G|495

Current chains

Chain 2

18S rRNA

Nearby chains