HL_3J81_022
3D structure
- PDB id
- 3J81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of a partial yeast 48S preinitiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 3J81|1|2|U|1003
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J81_022 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.2251
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
3J81|1|2|G|996
3J81|1|2|A|997
3J81|1|2|U|998
3J81|1|2|C|999
3J81|1|2|A|1000
3J81|1|2|G|1001
3J81|1|2|A|1002
3J81|1|2|U|1003
3J81|1|2|A|1004
3J81|1|2|C|1005
3J81|1|2|C|1006
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain 3
- mRNA
- Chain O
- uS11
- Chain a
- eS26
- Chain j
- eIF2 alpha
- Chain m
- eIF1
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