HL_3J81_040

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCUUCGGA

Length

8 nucleotides

Bulged bases

3J81|1|2|U|231

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J81_040 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.3803

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

3J81|1|2|U|228
3J81|1|2|C|229
3J81|1|2|U|230
3J81|1|2|U|231
3J81|1|2|C|232
3J81|1|2|G|233
3J81|1|2|G|234
3J81|1|2|A|235

Current chains

Chain 2

18S rRNA

Nearby chains