HL_3J8G_034

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J8G_034 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.2425

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

3J8G|1|B|G|1281
3J8G|1|B|U|1282
3J8G|1|B|G|1283
3J8G|1|B|A|1284
3J8G|1|B|A|1285
3J8G|1|B|A|1286
3J8G|1|B|A|1287
3J8G|1|B|G|1288
3J8G|1|B|C|1289

Current chains

Chain B

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22