Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3J8G_0351/B/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_3J8G_0761/B/1777:1787No text annotation
homologous
HL_5J7L_178
NA

Problematic loops

#loop idProblemSequence
HL_3J8G_073No text annotation
HL_3J8G_001No text annotation
HL_3J8G_002Mini UNCG
HL_3J8G_003No text annotation
HL_3J8G_004No text annotation
HL_3J8G_005No text annotation
HL_3J8G_006UNCG
HL_3J8G_007No text annotation
HL_3J8G_008No text annotation
HL_3J8G_009No text annotation
HL_3J8G_010No text annotation
HL_3J8G_011T-loop with 2 stacked bulged bases
HL_3J8G_012No text annotation
HL_3J8G_013T-loop with unstacked turn
HL_3J8G_014No text annotation
HL_3J8G_015No text annotation
HL_3J8G_016GNRA
HL_3J8G_017GNRA
HL_3J8G_018No text annotation
HL_3J8G_019T-loop with 2 stacked bulged bases
HL_3J8G_020No text annotation
HL_3J8G_021GNRA
HL_3J8G_022No text annotation
HL_3J8G_023No text annotation
HL_3J8G_024No text annotation
HL_3J8G_079No text annotation
HL_3J8G_025UNCG variation
HL_3J8G_072No text annotation
HL_3J8G_026No text annotation
HL_3J8G_027No text annotation
HL_3J8G_074No text annotation
HL_3J8G_028GNRA
HL_3J8G_029No text annotation
HL_3J8G_030No text annotation
HL_3J8G_031GNRA wlth tandem sheared
HL_3J8G_032Mini UNCG
HL_3J8G_033GNRA
HL_3J8G_034T-loop with 2 stacked bulged bases
HL_3J8G_036GNRA
HL_3J8G_037No text annotation
HL_3J8G_038No text annotation
HL_3J8G_039Pseudoknot geometry with 3' bulge
HL_3J8G_040No text annotation
HL_3J8G_041Mini UNCG
HL_3J8G_042No text annotation
HL_3J8G_043GNRA with extra cWW
HL_3J8G_075GNRA
HL_3J8G_044UNCG
HL_3J8G_045Mini UNCG
HL_3J8G_046No text annotation
HL_3J8G_047No text annotation
HL_3J8G_048No text annotation
HL_3J8G_049No text annotation
HL_3J8G_050No text annotation
HL_3J8G_051No text annotation
HL_3J8G_052No text annotation
HL_3J8G_053No text annotation
HL_3J8G_077No text annotation
HL_3J8G_054No text annotation
HL_3J8G_055No text annotation
HL_3J8G_078No text annotation
HL_3J8G_056No text annotation
HL_3J8G_057No text annotation
HL_3J8G_058No text annotation
HL_3J8G_080Pseudoknot geometry
HL_3J8G_059GNRA
HL_3J8G_060GNRA
HL_3J8G_061No text annotation
HL_3J8G_062No text annotation
HL_3J8G_063GNRA variation
HL_3J8G_064No text annotation
HL_3J8G_065GNRA
HL_3J8G_066GNRA
HL_3J8G_067Ribsomal LSU H95
HL_3J8G_068No text annotation
HL_3J8G_069Mini UNCG
HL_3J8G_070No text annotation
HL_3J8G_071GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3J8G_0381/B/870:872,
1/B/905:907
Isolated non-canonical cWW pair
homologous
IL_5J7L_273
NA
IL_3J8G_0441/B/1018:1024,
1/B/1140:1144
Kink-turn related
geometric
IL_4WF9_039
IL_57188.6
IL_3J8G_0981/B/2510:2512,
1/B/2574:2578
Isolated non-canonical cWW with bulges
homologous
IL_5J7L_340
NA
IL_3J8G_1051/B/2680:2684,
1/B/2725:2727
C-loop
homologous
IL_5J7L_347
NA

Problematic loops

#loop idProblemSequence
IL_3J8G_001Other IL
IL_3J8G_002Isolated near basepair
IL_3J8G_003Major groove intercalation
IL_3J8G_004No text annotation
IL_3J8G_005No text annotation
IL_3J8G_127No text annotation
IL_3J8G_113No text annotation
IL_3J8G_006Symmetric double minor groove platform
IL_3J8G_007Bacterial 5S Loop E
IL_3J8G_008Triple sheared with non-canonical cWW
IL_3J8G_009Single bulged A
IL_3J8G_010Minor groove platform
IL_3J8G_011No text annotation
IL_3J8G_114No text annotation
IL_3J8G_012Single stack bend
IL_3J8G_0138x7 Sarcin-Ricin; G-bulge
IL_3J8G_0147x6 Sarcin-Ricin; G-bulge
IL_3J8G_015No text annotation
IL_3J8G_016No text annotation
IL_3J8G_017No text annotation
IL_3J8G_018No text annotation
IL_3J8G_019Double sheared
IL_3J8G_020Isolated non-canonical cWW pair
IL_3J8G_021No text annotation
IL_3J8G_022AAA cross-strand stack
IL_3J8G_023Isolated non-canonical cWW pair
IL_3J8G_024tHW-tHW cross-strand stack
IL_3J8G_025Tandem non-canonical cWW pairs
IL_3J8G_026Single bulged A
IL_3J8G_115Isolated non-canonical cWW pair
IL_3J8G_027Single bulged G
IL_3J8G_028Triple sheared
IL_3J8G_029Major groove platform
IL_3J8G_030Multiple bulged bases
IL_3J8G_032Single stack bend
IL_3J8G_033No text annotation
IL_3J8G_034Single stack bend
IL_3J8G_0357x7 Sarcin-Ricin with intercalated A; G-bulge
IL_3J8G_036Single bulged G
IL_3J8G_037C-loop with bulged stacked A's
IL_3J8G_039No text annotation
IL_3J8G_128No text annotation
IL_3J8G_129No text annotation
IL_3J8G_116No text annotation
IL_3J8G_040Single bulged C
IL_3J8G_041UAA/GAN
IL_3J8G_117No text annotation
IL_3J8G_042SSU/LSU pseudoknot
IL_3J8G_043Single bulged U
IL_3J8G_045No text annotation
IL_3J8G_046Isolated non-canonical cWW pair
IL_3J8G_047Tandem non-canonical cWW pairs
IL_3J8G_048Kink-turn
IL_3J8G_049Isolated non-canonical cWW pair
IL_3J8G_050No text annotation
IL_3J8G_051Major groove platform
IL_3J8G_052Tandem non-canonical cWW pairs
IL_3J8G_130No text annotation
IL_3J8G_118Isolated cWS basepair
IL_3J8G_131No text annotation
IL_3J8G_053No text annotation
IL_3J8G_054Kink-turn
IL_3J8G_0558x7 Sarcin-Ricin; G-bulge
IL_3J8G_056Major groove platform; stack outside cWW
IL_3J8G_057C-loop
IL_3J8G_058UAA/GAN
IL_3J8G_119No text annotation
IL_3J8G_059tSH-tHW-tHS
IL_3J8G_060No text annotation
IL_3J8G_061UAA/GAN
IL_3J8G_062Tandem non-canonical cWW pairs
IL_3J8G_063Other IL
IL_3J8G_064No text annotation
IL_3J8G_065tSH-tHW-tHS
IL_3J8G_066No text annotation
IL_3J8G_067No text annotation
IL_3J8G_068UAA/GAN variation
IL_3J8G_069No text annotation
IL_3J8G_070Isolated tWW turn
IL_3J8G_132Major groove platform; stack outside cWW
IL_3J8G_071No text annotation
IL_3J8G_133Intercalated tWH
IL_3J8G_072tSH-tSH-tHH-tHS
IL_3J8G_0736x5 Sarcin-Ricin; G-bulge
IL_3J8G_074Triple sheared
IL_3J8G_075No text annotation
IL_3J8G_076Single bulged C
IL_3J8G_077Single bulged A
IL_3J8G_078Kink-turn related
IL_3J8G_079Major groove intercalation
IL_3J8G_080No text annotation
IL_3J8G_120No text annotation
IL_3J8G_134Major groove minor groove platform; mini C-loop
IL_3J8G_081No text annotation
IL_3J8G_082Major groove platform
IL_3J8G_083No text annotation
IL_3J8G_121No text annotation
IL_3J8G_084Single bulged U
IL_3J8G_085No text annotation
IL_3J8G_135Minor groove platform
IL_3J8G_086Isolated tHS basepair with bulges
IL_3J8G_087No text annotation
IL_3J8G_122No text annotation
IL_3J8G_088Single bulged U
IL_3J8G_089No text annotation
IL_3J8G_090Double sheared
IL_3J8G_091Stack outside cWW
IL_3J8G_092Single stack bend
IL_3J8G_093Major groove platform
IL_3J8G_123Decoding loop related
IL_3J8G_094Major groove platform
IL_3J8G_124No text annotation
IL_3J8G_095No text annotation
IL_3J8G_096Double sheared with non-canonical cWW
IL_3J8G_097No text annotation
IL_3J8G_136No text annotation
IL_3J8G_099No text annotation
IL_3J8G_100Major groove platform with intercalation
IL_3J8G_101Single bulged A
IL_3J8G_125Other IL
IL_3J8G_102No text annotation
IL_3J8G_137tSH-tHS-tHW
IL_3J8G_103Sarcin-Ricin target in LSU H95; G-bulge
IL_3J8G_104Isolated non-canonical cWW pair
IL_3J8G_106UAA/GAN related, with intercalation
IL_3J8G_107Multiple bulged bases
IL_3J8G_108UAA/GAN with extra cWW
IL_3J8G_126No text annotation
IL_3J8G_109No text annotation
IL_3J8G_110Major groove intercalation
IL_3J8G_111Multiple bulged bases with non-canonical cWW
IL_3J8G_112tHS double platform

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3J8G_0241/B/683:689,
1/B/773:775,
1/B/791:794
No text annotation
homologous
J3_4WF9_002
J3_46658.1
J3_3J8G_0091/B/2517:2520,
1/B/2545:2547,
1/B/2561:2567
No text annotation
homologous
J3_5J7L_046
NA

Problematic loops

#loop idProblemSequence
J3_3J8G_001No text annotation
J3_3J8G_014No text annotation
J3_3J8G_015No text annotation
J3_3J8G_011No text annotation
J3_3J8G_016No text annotation
J3_3J8G_012No text annotation
J3_3J8G_002No text annotation
J3_3J8G_017No text annotation
J3_3J8G_018No text annotation
J3_3J8G_003No text annotation
J3_3J8G_019No text annotation
J3_3J8G_004No text annotation
J3_3J8G_005No text annotation
J3_3J8G_006No text annotation
J3_3J8G_020No text annotation
J3_3J8G_021No text annotation
J3_3J8G_007Kink-turn 3-way junction
J3_3J8G_022No text annotation
J3_3J8G_008No text annotation
J3_3J8G_023No text annotation
J3_3J8G_013No text annotation
J3_3J8G_010No text annotation
J4_3J8G_001No text annotation
J4_3J8G_002No text annotation
J4_3J8G_003No text annotation
J4_3J8G_013No text annotation
J4_3J8G_004No text annotation
J4_3J8G_005No text annotation
J4_3J8G_006No text annotation
J4_3J8G_007No text annotation
J4_3J8G_008No text annotation
J4_3J8G_014No text annotation
J4_3J8G_009No text annotation
J4_3J8G_010No text annotation
J4_3J8G_011No text annotation
J4_3J8G_012No text annotation
J5_3J8G_001No text annotation
J5_3J8G_002No text annotation
J5_3J8G_003No text annotation
J5_3J8G_004No text annotation
J5_3J8G_005No text annotation
J5_3J8G_006No text annotation
J6_3J8G_001No text annotation
J7_3J8G_001No text annotation
J7_3J8G_003No text annotation
J7_3J8G_002No text annotation

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