HL_3J8G_056

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

3J8G|1|B|A|2268, 3J8G|1|B|C|2275

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J8G_056 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.3366

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

3J8G|1|B|C|2264
3J8G|1|B|U|2265
3J8G|1|B|A|2266
3J8G|1|B|A|2267
3J8G|1|B|A|2268
3J8G|1|B|G|2269
3J8G|1|B|A|2270
3J8G|1|B|G|2271
3J8G|1|B|U|2272
3J8G|1|B|A|2273
3J8G|1|B|A|2274
3J8G|1|B|C|2275
3J8G|1|B|G|2276

Current chains

Chain B

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain Y

50S ribosomal protein L27