HL_3J92_022

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

3J92|1|5|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_022 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3937

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

3J92|1|5|G|1479
3J92|1|5|C|1480
3J92|1|5|C|1481
3J92|1|5|G|1482
3J92|1|5|C|1483
3J92|1|5|G|1484
3J92|1|5|C|1485
3J92|1|5|C|1486

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain i

eL36