RNA 3D Hub //

3J92 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3J92_0041/5/37:44No text annotation
geometric
HL_5TBW_001
NA
HL_3J92_0061/5/89:95No text annotation
homologous
HL_8C3A_003
NA
HL_3J92_0081/5/204:211T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_3J92_0091/5/222:226No text annotation
homologous
HL_8C3A_006
NA
HL_3J92_0101/5/230:238T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_3J92_0111/5/289:298No text annotation
homologous
HL_5TBW_008
NA
HL_3J92_0121/5/314:323Pseudoknot geometry
geometric
HL_4QLM_002
HL_77600.2
HL_3J92_0131/5/368:373GNRA
homologous
HL_8C3A_010
NA
HL_3J92_0141/5/393:398GNRA
homologous
HL_5TBW_011
NA
HL_3J92_0171/5/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_3J92_0191/5/1389:1394GNRA
homologous
HL_8C3A_016
NA
HL_3J92_0221/5/1479:1486UNCG variation
geometric
HL_5J7L_200
HL_08100.1
HL_3J92_0241/5/1593:1602No text annotation
homologous
HL_5TBW_020
NA
HL_3J92_0251/5/1627:1635No text annotation
homologous
HL_5TBW_021
NA
HL_3J92_0261/5/1675:1680Externally structured
homologous
HL_5TBW_022
NA
HL_3J92_0291/5/1864:1870GNRA
homologous
HL_5TBW_025
NA
HL_3J92_0301/5/1886:1893No text annotation
homologous
HL_5TBW_026
NA
HL_3J92_0341/5/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_3J92_0351/5/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_5TBW_031
NA
HL_3J92_0361/5/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_3J92_0371/5/2458:2463GNRA variation
homologous
HL_5TBW_033
NA
HL_3J92_0391/5/2523:2532No text annotation
homologous
HL_5TBW_035
NA
HL_3J92_0411/5/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_3J92_0421/5/2623:2632No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_3J92_0431/5/2664:2670No text annotation
homologous
HL_8C3A_038
NA
HL_3J92_0451/5/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_3J92_0461/5/2792:2799No text annotation
homologous
HL_5TBW_041
NA
HL_3J92_0471/5/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_3J92_0481/5/2872:2877UNCG
homologous
HL_8C3A_043
NA
HL_3J92_0491/5/3614:3618No text annotation
homologous
HL_5TBW_045
NA
HL_3J92_0501/5/3639:3649No text annotation
homologous
HL_5TBW_046
NA
HL_3J92_0511/5/3668:3674GNRA
homologous
HL_8C3A_047
NA
HL_3J92_0521/5/3723:3729No text annotation
HL_3J92_0541/5/3796:3804No text annotation
homologous
HL_8C3A_050
NA
HL_3J92_0551/5/3873:3882No text annotation
homologous
HL_5TBW_051
NA
HL_3J92_0591/5/4193:4201No text annotation
homologous
HL_5TBW_054
NA
HL_3J92_0601/5/4210:4222No text annotation
homologous
HL_8C3A_056
NA
HL_3J92_0611/5/4250:4258No text annotation
homologous
HL_8C3A_057
NA
HL_3J92_0621/5/4270:4277Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_3J92_0631/5/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_3J92_0651/5/4352:4362No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_3J92_0661/5/4417:4425No text annotation
homologous
HL_5TBW_061
NA
HL_3J92_0671/5/4473:4481GNRA with extra cWW
geometric
HL_4WF9_053
HL_04259.3
HL_3J92_0681/5/4497:4503No text annotation
homologous
HL_8C3A_064
NA
HL_3J92_0691/5/4540:4545GNRA
homologous
HL_5TBW_064
NA
HL_3J92_0701/5/4603:4608GNRA
homologous
HL_8C3A_066
NA
HL_3J92_0711/5/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_3J92_0721/5/4688:4702No text annotation
geometric
HL_4WF9_062
HL_74055.2
HL_3J92_0731/5/4907:4914No text annotation
geometric
HL_8C3A_006
NA
HL_3J92_0741/5/4975:4983No text annotation
homologous
HL_5TBW_070
NA
HL_3J92_0771/7/86:91GNRA
homologous
HL_5TBW_186
NA
HL_3J92_0781/8/47:56Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_93438.2
HL_3J92_0791/8/68:90No text annotation
homologous
HL_8C3A_075
NA
HL_3J92_0801/8/107:112No text annotation
HL_3J92_0861/8/121:129No text annotation

Problematic loops

#loop idProblemSequence
HL_3J92_001tRNA D-loop
HL_3J92_002tRNA anticodon loop
HL_3J92_003T-loop with 2 stacked bulged bases
HL_3J92_005No text annotation
HL_3J92_007No text annotation
HL_3J92_082No text annotation
HL_3J92_015GNRA
HL_3J92_016GNRA
HL_3J92_018No text annotation
HL_3J92_020No text annotation
HL_3J92_021No text annotation
HL_3J92_023GNRA
HL_3J92_027GNRA
HL_3J92_028No text annotation
HL_3J92_083No text annotation
HL_3J92_031No text annotation
HL_3J92_032GNRA wlth tandem sheared
HL_3J92_033No text annotation
HL_3J92_038No text annotation
HL_3J92_040GNRA
HL_3J92_044No text annotation
HL_3J92_084No text annotation
HL_3J92_053No text annotation
HL_3J92_056No text annotation
HL_3J92_057UNCG
HL_3J92_058No text annotation
HL_3J92_064GNRA
HL_3J92_075UNCG variation
HL_3J92_085No text annotation
HL_3J92_076No text annotation
HL_3J92_081No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3J92_0011/5/6:7,
1/8/149:151		Single bulged C
homologous
IL_8C3A_002
NA
IL_3J92_0021/5/12:14,
1/8/143:144		Single bulged U
homologous
IL_8C3A_003
NA
IL_3J92_0031/5/16:18,
1/8/139:141		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_3J92_0041/5/26:27,
1/5/55:57		Single stack bend
homologous
IL_5TBW_004
NA
IL_3J92_0051/5/30:37,
1/5/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_84694.2
IL_3J92_0061/5/81:88,
1/5/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_3J92_1801/5/118:122,
1/5/147:153		No text annotation
IL_3J92_0081/5/121:122,
1/5/147:152		No text annotation
homologous
IL_5TBW_007
NA
IL_3J92_0141/5/199:201,
1/5/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_3J92_0151/5/285:286,
1/5/300:302		Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_3J92_0171/5/339:342,
1/8/32:33		Minor groove platform
geometric
IL_7RQB_073
NA
IL_3J92_0181/5/348:350,
1/8/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_3J92_0191/5/387:390,
1/5/401:414		No text annotation
homologous
IL_5TBW_014
NA
IL_3J92_0201/5/415:421,
1/8/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_3J92_0341/5/708:709,
1/5/1287:1289		Single bulged G
geometric
IL_4LFB_036
IL_00225.14
IL_3J92_0361/5/726:731,
1/5/938:940		No text annotation
IL_3J92_0501/5/1357:1360,
1/5/1378:1382		No text annotation
IL_3J92_1881/5/1357:1361,
1/5/1376:1382		No text annotation
IL_3J92_0511/5/1360:1361,
1/5/1376:1378		No text annotation
IL_3J92_0561/5/1520:1522,
1/5/1655:1657		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_3J92_0571/5/1522:1526,
1/5/1648:1655		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_3J92_0581/5/1550:1551,
1/5/1576:1578		Single bulged G
homologous
IL_8C3A_032
NA
IL_3J92_0591/5/1551:1555,
1/5/1572:1576		Triple sheared
geometric
IL_4V9F_027
IL_50730.2
IL_3J92_0601/5/1586:1589,
1/5/1605:1607		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_3J92_0611/5/1590:1592,
1/5/1603:1604		Single bulged U
homologous
IL_8C3A_035
NA
IL_3J92_0621/5/1624:1626,
1/5/1636:1640		No text annotation
homologous
IL_8C3A_036
NA
IL_3J92_0631/5/1671:1672,
1/5/1682:1684		No text annotation
IL_3J92_0641/5/1672:1674,
1/5/1681:1682		Single stack bend
geometric
IL_4V83_236
IL_90729.1
IL_3J92_0651/5/1686:1688,
1/5/1848:1851		No text annotation
IL_3J92_0691/5/1739:1744,
1/5/1786:1789		C-loop
homologous
IL_5TBW_040
NA
IL_3J92_0701/5/1746:1749,
1/5/1781:1784		Tandem non-canonical cWW pairs
homologous
IL_5TBW_041
NA
IL_3J92_0711/5/1749:1751,
1/5/1779:1781		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_3J92_0741/5/1858:1860,
1/5/1874:1876		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_3J92_0771/5/1911:1918,
1/5/2064:2065		SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_3J92_0781/5/1918:1920,
1/5/2063:2064		No text annotation
IL_3J92_0791/5/1920:1922,
1/5/2062:2063		No text annotation
geometric
IL_8CRE_390
IL_61258.15
IL_3J92_0801/5/1926:1933,
1/5/2053:2058		No text annotation
geometric
IL_5TBW_051
NA
IL_3J92_0811/5/1933:1944,
1/5/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_3J92_0821/5/1946:1948,
1/5/2035:2036		Single bulged U
homologous
IL_8C3A_056
NA
IL_3J92_0831/5/1957:1965,
1/5/2022:2026		Kink-turn
geometric
IL_4V9F_042
IL_99692.2
IL_3J92_0871/5/2290:2292,
1/5/2342:2345		Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_3J92_0881/5/2299:2301,
1/5/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_3J92_0891/5/2302:2309,
1/5/2329:2333		Kink-turn
homologous
IL_5TBW_059
NA
IL_3J92_0901/5/2312:2314,
1/5/2325:2326		Single bulged A
homologous
IL_5TBW_060
NA
IL_3J92_0911/5/2358:2364,
1/5/3858:3863		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_3J92_0921/5/2415:2419,
1/5/2427:2429		C-loop
geometric
IL_7A0S_047
IL_83150.2
IL_3J92_0931/5/2446:2450,
1/5/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_3J92_0951/5/2542:2547,
1/5/2772:2774		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_3J92_0961/5/2589:2593,
1/5/2752:2756		Triple sheared
homologous
IL_5TBW_067
NA
IL_3J92_0971/5/2613:2614,
1/5/2724:2726		Single bulged C
homologous
IL_5TBW_069
NA
IL_3J92_0981/5/2614:2615,
1/5/2722:2724		Single stack bend
geometric
IL_5J7L_249
IL_90729.1
IL_3J92_0991/5/2622:2623,
1/5/2632:2634		Single stack bend
geometric
IL_4V83_236
IL_90729.1
IL_3J92_1001/5/2646:2648,
1/5/2685:2688		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_85599.2
IL_3J92_1011/5/2651:2653,
1/5/2681:2682		Single bulged G
geometric
IL_3NDB_004
IL_00225.14
IL_3J92_1021/5/2656:2662,
1/5/2672:2678		Kink-turn
homologous
IL_5TBW_073
NA
IL_3J92_1031/5/2704:2705,
1/5/2710:2712		No text annotation
IL_3J92_1041/5/2832:2838,
1/5/3850:3853		No text annotation
homologous
IL_5TBW_074
NA
IL_3J92_1051/5/2844:2846,
1/5/3842:3844		No text annotation
homologous
IL_8C3A_081
NA
IL_3J92_1061/5/2847:2850,
1/5/3840:3841		Major groove platform; stack outside cWW
homologous
IL_5TBW_076
NA
IL_3J92_1911/5/2847:2855,
1/5/3837:3841		No text annotation
homologous
IL_8P9A_305
IL_22854.4
IL_3J92_1071/5/2850:2855,
1/5/3837:3840		Intercalated tWH
geometric
IL_4V9F_062
IL_76758.2
IL_3J92_1081/5/2867:2872,
1/5/2877:2883		tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_47346.2
IL_3J92_1091/5/2889:2891,
1/5/3610:3612		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_3J92_1101/5/2896:2897,
1/5/3602:3605		No text annotation
homologous
IL_8C3A_086
NA
IL_3J92_1121/5/3632:3633,
1/5/3827:3829		Single bulged A
homologous
IL_5TBW_082
NA
IL_3J92_1131/5/3660:3665,
1/5/3677:3684		Kink-turn related
homologous
IL_5TBW_083
NA
IL_3J92_1141/5/3700:3703,
1/5/3749:3750		Major groove intercalation
homologous
IL_5TBW_084
NA
IL_3J92_1151/5/3704:3705,
1/5/3745:3748		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_3J92_1161/5/3708:3710,
1/5/3741:3742		Single bulged U
geometric
IL_3WBM_001
IL_89505.4
IL_3J92_1171/5/3710:3714,
1/5/3739:3741		No text annotation
IL_3J92_1931/5/3710:3721,
1/5/3732:3741		No text annotation
IL_3J92_1181/5/3714:3721,
1/5/3732:3739		No text annotation
IL_3J92_1201/5/3780:3781,
1/5/3811:3814		No text annotation
homologous
IL_8C3A_094
NA
IL_3J92_1211/5/3781:3792,
1/5/3808:3811		No text annotation
geometric
IL_5TBW_090
NA
IL_3J92_1221/5/3895:3898,
1/5/4563:4565		Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_3J92_1231/5/3900:3902,
1/5/4558:4561		No text annotation
homologous
IL_8C3A_097
NA
IL_3J92_1241/5/3913:3915,
1/5/4388:4389		Single bulged U
homologous
IL_5TBW_093
NA
IL_3J92_1251/5/3916:3917,
1/5/4384:4387		Minor groove platform
homologous
IL_5TBW_094
NA
IL_3J92_1261/5/3927:3929,
1/5/4181:4184		No text annotation
homologous
IL_8C3A_100
NA
IL_3J92_1271/5/4082:4088,
1/5/4161:4164		No text annotation
homologous
IL_8C3A_106
NA
IL_3J92_1291/5/4191:4192,
1/5/4202:4204		Single bulged A
homologous
IL_5TBW_098
NA
IL_3J92_1311/5/4291:4293,
1/5/4317:4318		Single bulged A
geometric
IL_4V88_399
NA
IL_3J92_1321/5/4295:4298,
1/5/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_3J92_1341/5/4400:4401,
1/5/4442:4444		Major groove platform
homologous
IL_5TBW_102
NA
IL_3J92_1351/5/4401:4403,
1/5/4440:4442		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_3J92_1361/5/4403:4405,
1/5/4439:4440		Major groove platform
geometric
IL_5TBW_104
NA
IL_3J92_1371/5/4405:4407,
1/5/4435:4439		Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_3J92_1381/5/4412:4416,
1/5/4426:4430		Triple sheared
homologous
IL_5TBW_106
NA
IL_3J92_1391/5/4453:4454,
1/5/4526:4528		Major groove platform
homologous
IL_8C3A_115
NA
IL_3J92_1401/5/4456:4458,
1/5/4520:4524		No text annotation
homologous
IL_8C3A_116
NA
IL_3J92_1411/5/4458:4459,
1/5/4517:4520		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_3J92_1421/5/4466:4470,
1/5/4485:4491		No text annotation
IL_3J92_1431/5/4472:4473,
1/5/4481:4483		No text annotation
IL_3J92_1441/5/4495:4497,
1/5/4503:4505		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_3J92_1451/5/4537:4538,
1/5/4547:4549		Single bulged A
geometric
IL_7RQB_101
NA
IL_3J92_1461/5/4578:4579,
1/5/4723:4725		Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_3J92_1941/5/4578:4582,
1/5/4721:4725		No text annotation
IL_3J92_1471/5/4579:4582,
1/5/4721:4723		No text annotation
IL_3J92_1481/5/4582:4585,
1/5/4717:4721		Double sheared
homologous
IL_5TBW_114
NA
IL_3J92_1491/5/4590:4592,
1/5/4618:4620		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_3J92_1501/5/4596:4603,
1/5/4608:4614		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_3J92_1511/5/4624:4629,
1/5/4669:4673		No text annotation
IL_3J92_1521/5/4632:4637,
1/5/4662:4666		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_3J92_1531/5/4638:4640,
1/5/4659:4661		Isolated non-canonical cWW pair
geometric
IL_5MWI_006
NA
IL_3J92_1541/5/4641:4642,
1/5/4655:4658		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_3J92_1951/5/4681:4685,
1/5/4705:4709		UAA/GAN
homologous
IL_8C3A_129
NA
IL_3J92_1971/5/4755:4765,
1/5/4869:4878		No text annotation
IL_3J92_1611/5/4891:4896,
1/5/4924:4928		No text annotation
IL_3J92_1631/5/4966:4968,
1/5/5065:5066		Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_3J92_1641/5/4972:4975,
1/5/4983:4986		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_3J92_1991/5/4989:4994,
1/5/5057:5060		No text annotation
IL_3J92_1651/5/4992:4994,
1/5/5057:5059		Isolated non-canonical cWW pair
geometric
IL_3D0U_006
IL_87907.2
IL_3J92_1661/5/4996:4997,
1/5/5053:5055		Single bulged C
geometric
IL_1KUQ_002
IL_61258.15
IL_3J92_1671/5/5000:5002,
1/5/5045:5050		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_3J92_1681/5/5003:5009,
1/5/5039:5044		No text annotation
IL_3J92_1691/5/5012:5014,
1/5/5035:5036		Single bulged C
geometric
IL_4WF9_035
IL_61258.15
IL_3J92_1701/5/5014:5017,
1/5/5032:5035		Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_3J92_1751/7/71:78,
1/7/98:104		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_3J92_1761/7/79:81,
1/7/95:97		No text annotation
geometric
IL_7RQB_015
NA
IL_3J92_1771/7/82:85,
1/7/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_3J92_1781/8/64:66,
1/8/92:95		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_3J92_1791/8/121:122,
1/8/125:129		No text annotation

Problematic loops

#loop idProblemSequence
IL_3J92_007Stack outside cWW
IL_3J92_009No text annotation
IL_3J92_010No text annotation
IL_3J92_011Single stack bend
IL_3J92_012Major groove intercalation
IL_3J92_013No text annotation
IL_3J92_016Single stack bend
IL_3J92_021No text annotation
IL_3J92_022Single bulged C
IL_3J92_023Isolated non-canonical cWW pair
IL_3J92_024Single stack bend
IL_3J92_025No text annotation
IL_3J92_181No text annotation
IL_3J92_026No text annotation
IL_3J92_182No text annotation
IL_3J92_027Minor groove platform with extra cWW
IL_3J92_183No text annotation
IL_3J92_028No text annotation
IL_3J92_184No text annotation
IL_3J92_029Single stack bend
IL_3J92_030No text annotation
IL_3J92_031Single stack bend
IL_3J92_032Single bulged A
IL_3J92_033Isolated non-canonical cWW pair
IL_3J92_185Multiple bulged bases
IL_3J92_035No text annotation
IL_3J92_037No text annotation
IL_3J92_038Single stack bend
IL_3J92_039Isolated non-canonical cWW pair
IL_3J92_040No text annotation
IL_3J92_186No text annotation
IL_3J92_041No text annotation
IL_3J92_042No text annotation
IL_3J92_043No text annotation
IL_3J92_187No text annotation
IL_3J92_044No text annotation
IL_3J92_045Minor groove platform
IL_3J92_046No text annotation
IL_3J92_047Single bulged C
IL_3J92_048Single stack bend
IL_3J92_049Isolated near basepair
IL_3J92_052No text annotation
IL_3J92_053Double sheared
IL_3J92_054Single bulged A
IL_3J92_055Single base bend
IL_3J92_066No text annotation
IL_3J92_0675x5 Sarcin-Ricin with intercalated A; G-bulge
IL_3J92_068Minor groove platform
IL_3J92_072No text annotation
IL_3J92_189Tandem non-canonical cWW pairs
IL_3J92_073Isolated non-canonical cWW pair
IL_3J92_075No text annotation
IL_3J92_076UAA/GAN
IL_3J92_084No text annotation
IL_3J92_085Major groove platform with extra cWW
IL_3J92_086No text annotation
IL_3J92_190No text annotation
IL_3J92_094Not an internal loop
IL_3J92_192No text annotation
IL_3J92_111No text annotation
IL_3J92_119Single stack bend
IL_3J92_128Single stack bend
IL_3J92_130Isolated tHS basepair with bulges
IL_3J92_133Single stack bend
IL_3J92_155UAA/GAN with extra cWW
IL_3J92_156No text annotation
IL_3J92_196No text annotation
IL_3J92_157No text annotation
IL_3J92_158No text annotation
IL_3J92_159Tandem non-canonical cWW pairs
IL_3J92_198No text annotation
IL_3J92_160No text annotation
IL_3J92_162No text annotation
IL_3J92_171Single bulged A
IL_3J92_172Minor groove platform related
IL_3J92_173Major groove minor groove platform; mini C-loop
IL_3J92_174Symmetric double minor groove platform

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3J92_0201/5/196:199,
1/5/215:228,
1/5/240:244		No text annotation
J3_3J92_0211/5/351:367,
1/5/374:379,
1/8/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_3J92_0021/5/380:387,
1/5/414:415,
1/8/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_3J92_0221/5/380:390,
1/5/401:415,
1/8/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_3J92_0031/5/448:456,
1/5/700:704,
1/5/1293:1298		No text annotation
J3_3J92_0041/5/711:713,
1/5/955:976,
1/5/1278:1285		No text annotation
J3_3J92_0051/5/1531:1537,
1/5/1622:1624,
1/5/1640:1643		No text annotation
homologous
J3_5TBW_004
NA
J3_3J92_0061/5/1545:1548,
1/5/1580:1584,
1/5/1609:1614		No text annotation
homologous
J3_5TBW_005
NA
J3_3J92_0081/5/2393:2399,
1/5/2805:2807,
1/5/2819:2822		No text annotation
homologous
J3_5TBW_008
NA
J3_3J92_0091/5/2402:2405,
1/5/2785:2791,
1/5/2800:2802		No text annotation
homologous
J3_8C3A_007
NA
J3_3J92_0101/5/2440:2445,
1/5/2515:2519,
1/5/2536:2537		No text annotation
homologous
J3_5TBW_010
NA
J3_3J92_0251/5/2451:2456,
1/5/2465:2476,
1/5/2501:2508		No text annotation
J3_3J92_0261/5/2549:2555,
1/5/2572:2575,
1/5/2757:2770		No text annotation
J3_3J92_0111/5/2575:2576,
1/5/2585:2589,
1/5/2756:2757		No text annotation
homologous
J3_8C3A_054
NA
J3_3J92_0271/5/2575:2577,
1/5/2584:2589,
1/5/2756:2757		No text annotation
homologous
J3_8P9A_057
NA
J3_3J92_0281/5/2598:2602,
1/5/2737:2738,
1/5/2742:2747		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_3J92_0121/5/3937:3939,
1/5/4074:4078,
1/5/4168:4173		No text annotation
geometric
J3_7A0S_009
J3_89368.5
J3_3J92_0131/5/4091:4094,
1/5/4114:4129,
1/5/4155:4158		No text annotation
homologous
J3_8C3A_009
NA
J3_3J92_0141/5/4228:4230,
1/5/4331:4342,
1/5/4370:4375		No text annotation
homologous
J3_8C3A_056
NA
J3_3J92_0151/5/4241:4243,
1/5/4267:4269,
1/5/4278:4283		No text annotation
homologous
J3_5TBW_013
NA
J3_3J92_0161/5/4463:4466,
1/5/4491:4493,
1/5/4507:4513		No text annotation
homologous
J3_8P9A_063
J3_62630.1
J3_3J92_0291/5/4748:4754,
1/5/4879:4888,
1/5/4931:4952		No text annotation
J3_3J92_0301/5/4970:4972,
1/5/4986:4989,
1/5/5060:5063		No text annotation
J3_3J92_0181/7/9:14,
1/7/65:66,
1/7/109:110		No text annotation
homologous
J3_5TBW_045
NA
J3_3J92_0191/8/44:45,
1/8/58:64,
1/8/95:99		No text annotation
homologous
J3_8C3A_060
NA
J4_3J92_0021/5/111:112,
1/5/278:283,
1/5/304:310,
1/5/327:330		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_3J92_0031/5/196:199,
1/5/215:222,
1/5/226:228,
1/5/240:244		No text annotation
J4_3J92_0131/5/980:983,
1/5/1070:1074,
1/5/1236:1245,
1/5/1265:1274		No text annotation
J4_3J92_0051/5/2365:2371,
1/5/2389:2391,
1/5/2824:2829,
1/5/3856:3857		No text annotation
J4_3J92_0061/5/2406:2410,
1/5/2434:2439,
1/5/2538:2539,
1/5/2777:2784		No text annotation
homologous
J4_8C3A_004
NA
J4_3J92_0071/5/2618:2619,
1/5/2637:2642,
1/5/2692:2698,
1/5/2718:2719		No text annotation
J4_3J92_0081/5/3634:3638,
1/5/3650:3654,
1/5/3690:3694,
1/5/3821:3826		No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_3J92_0091/5/3696:3698,
1/5/3752:3754,
1/5/3770:3780,
1/5/3814:3819		No text annotation
J4_3J92_0101/5/4231:4235,
1/5/4289:4291,
1/5/4318:4319,
1/5/4328:4330		No text annotation
J4_3J92_0111/5/4231:4235,
1/5/4289:4293,
1/5/4317:4319,
1/5/4328:4330		No text annotation
homologous
J4_8P9A_019
J4_04930.6
J4_3J92_0121/5/4587:4590,
1/5/4620:4621,
1/5/4676:4678,
1/5/4712:4715		No text annotation
J5_3J92_0011/5/19:21,
1/8/35:42,
1/8/101:106,
1/8/113:114,
1/8/136:138		No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_3J92_0021/5/1335:1340,
1/5/1516:1519,
1/5/1658:1661,
1/5/2288:2290,
1/5/2345:2351		No text annotation
homologous
J5_8P9A_011
J5_63811.1
J5_3J92_0031/5/2847:2863,
1/5/2887:2888,
1/5/3613:3614,
1/5/3618:3626,
1/5/3835:3841		No text annotation
J5_3J92_0041/5/2855:2863,
1/5/2887:2888,
1/5/3613:3614,
1/5/3618:3626,
1/5/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J5_3J92_0051/5/3903:3910,
1/5/4392:4400,
1/5/4444:4453,
1/5/4528:4534,
1/5/4552:4557		No text annotation
J5_3J92_0061/5/3920:3923,
1/5/4188:4191,
1/5/4204:4205,
1/5/4227:4228,
1/5/4375:4381		No text annotation
homologous
J5_8C3A_006
NA
J6_3J92_0011/5/21:26,
1/5/57:67,
1/5/74:78,
1/5/105:109,
1/5/332:339,
1/8/33:35		No text annotation
J6_3J92_0021/5/1352:1355,
1/5/1384:1388,
1/5/1395:1399,
1/5/1418:1421,
1/5/1464:1466,
1/5/1499:1504		No text annotation
J6_3J92_0031/5/3920:3923,
1/5/4188:4191,
1/5/4204:4205,
1/5/4227:4230,
1/5/4331:4342,
1/5/4370:4381		No text annotation
J7_3J92_0011/5/1666:1671,
1/5/1684:1685,
1/5/1852:1855,
1/5/1879:1884,
1/5/1895:1899,
1/5/2077:2078,
1/5/2278:2283		No text annotation

Problematic loops

#loop idProblemSequence
J3_3J92_001No text annotation
J3_3J92_023No text annotation
J3_3J92_024No text annotation
J3_3J92_007No text annotation
J3_3J92_017No text annotation
J4_3J92_001tRNA junction
J4_3J92_004No text annotation

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