HL_3J92_027

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

3J92|1|5|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_027 not in the Motif Atlas

Geometric match to HL_3RG5_007

Geometric discrepancy: 0.3023

The information below is about HL_3RG5_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

3J92|1|5|C|1763
3J92|1|5|G|1764
3J92|1|5|A|1765
3J92|1|5|A|1766
3J92|1|5|A|1767
3J92|1|5|C|1768
3J92|1|5|G|1769

Current chains

Chain 5

28S rRNA

Nearby chains

Chain v

NEMF