HL_3J92_036

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

3J92|1|5|G|2421, 3J92|1|5|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_036 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1878

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

3J92|1|5|A|2420
3J92|1|5|G|2421
3J92|1|5|C|2422
3J92|1|5|A|2423
3J92|1|5|G|2424
3J92|1|5|U|2425
3J92|1|5|U|2426

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19