HL_3J92_039

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

3J92|1|5|U|2530, 3J92|1|5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_039 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1408

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3J92|1|5|G|2523
3J92|1|5|U|2524
3J92|1|5|U|2525
3J92|1|5|C|2526
3J92|1|5|A|2527
3J92|1|5|G|2528
3J92|1|5|A|2529
3J92|1|5|U|2530
3J92|1|5|C|2531
3J92|1|5|C|2532

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain X

uL23

Chain g

eL34