HL_3J92_042

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGUUCUCUUU

Length

10 nucleotides

Bulged bases

3J92|1|5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_042 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3384

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

3J92|1|5|A|2623
3J92|1|5|G|2624
3J92|1|5|U|2625
3J92|1|5|U|2626
3J92|1|5|C|2627
3J92|1|5|U|2628
3J92|1|5|C|2629
3J92|1|5|U|2630
3J92|1|5|U|2631
3J92|1|5|U|2632

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain U

eL22

Chain z

Listerin