HL_3J92_062

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_062 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.127

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

3J92|1|5|C|4270
3J92|1|5|A|4271
3J92|1|5|G|4272
3J92|1|5|A|4273
3J92|1|5|A|4274
3J92|1|5|G|4275
3J92|1|5|G|4276
3J92|1|5|G|4277

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

uL16

Chain T

eL21