HL_3J92_070

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_070 not in the Motif Atlas

Homologous match to HL_8C3A_066

Geometric discrepancy: 0.0866

The information below is about HL_8C3A_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3J92|1|5|C|4603
3J92|1|5|G|4604
3J92|1|5|A|4605
3J92|1|5|G|4606
3J92|1|5|A|4607
3J92|1|5|G|4608

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain m

eL40

Chain v

NEMF

Chain w

Listerin

Chain x

Listerin