HL_3J9M_006
3D structure
- PDB id
- 3J9M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitochondrial ribosome (class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUCUGCAUAA
- Length
- 10 nucleotides
- Bulged bases
- 3J9M|1|A|A|1855
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J9M_006 not in the Motif Atlas
- Geometric match to HL_5J7L_150
- Geometric discrepancy: 0.1052
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
3J9M|1|A|U|1847
3J9M|1|A|U|1848
3J9M|1|A|C|1849
3J9M|1|A|U|1850
3J9M|1|A|G|1851
3J9M|1|A|C|1852
3J9M|1|A|A|1853
3J9M|1|A|U|1854
3J9M|1|A|A|1855
3J9M|1|A|A|1856
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 0
- bL32m
- Chain E
- uL3m
- Chain M
- uL15m
- Chain R
- bL20m
- Chain S
- bL21m
- Chain o
- mL63
Coloring options: