3J9M Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_3J9M_001 | 1/A/1722:1729 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
HL_3J9M_002 | 1/A/1746:1752 | No text annotation | geometric HL_5J7L_141 HL_37369.2 | |
HL_3J9M_003 | 1/A/1786:1791 | GNRA | homologous HL_5J7L_147 HL_37824.8 | |
HL_3J9M_004 | 1/A/1803:1807 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
HL_3J9M_005 | 1/A/1831:1839 | No text annotation | geometric HL_4V88_198 NA | |
HL_3J9M_006 | 1/A/1847:1856 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 HL_28252.9 | |
HL_3J9M_007 | 1/A/1884:1889 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
HL_3J9M_009 | 1/A/1954:1963 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
HL_3J9M_010 | 1/A/1988:1996 | No text annotation | geometric HL_5TBW_021 NA | |
HL_3J9M_011 | 1/A/2035:2040 | No text annotation | geometric HL_4WF9_025 HL_55195.3 | |
HL_3J9M_013 | 1/A/2107:2114 | GNRA | homologous HL_4WF9_027 HL_37824.8 | |
HL_3J9M_014 | 1/A/2129:2136 | No text annotation | homologous HL_5J7L_160 HL_42998.2 | |
HL_3J9M_015 | 1/A/2175:2185 | No text annotation | homologous HL_6PRV_001 HL_19210.3 | |
HL_3J9M_016 | 1/A/2202:2209 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
HL_3J9M_017 | 1/A/2279:2286 | No text annotation | geometric HL_1KH6_003 HL_27483.1 | |
HL_3J9M_018 | 1/A/2319:2324 | UNCG | geometric HL_4U7U_001 HL_34617.5 | |
HL_3J9M_020 | 1/A/2400:2403 | Mini UNCG | geometric HL_7A0S_039 HL_48778.2 | |
HL_3J9M_021 | 1/A/2428:2435 | No text annotation | homologous HL_7A0S_040 HL_89567.2 | |
HL_3J9M_022 | 1/A/2497:2507 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
HL_3J9M_023 | 1/A/2518:2532 | No text annotation | ||
HL_3J9M_024 | 1/A/2556:2559 | No text annotation | geometric HL_4O26_001 HL_35941.1 | |
HL_3J9M_026 | 1/A/2612:2620 | No text annotation | homologous HL_7A0S_048 HL_20167.2 | |
HL_3J9M_027 | 1/A/2690:2699 | No text annotation | homologous HL_4WF9_047 HL_61996.3 | |
HL_3J9M_029 | 1/A/2812:2820 | No text annotation | homologous HL_4WF9_049 HL_85367.2 | |
HL_3J9M_030 | 1/A/2828:2840 | No text annotation | ||
HL_3J9M_031 | 1/A/2862:2870 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
HL_3J9M_032 | 1/A/2902:2907 | GNRA | geometric HL_5B2P_001 HL_37824.8 | |
HL_3J9M_033 | 1/A/2958:2966 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
HL_3J9M_034 | 1/A/3015:3022 | No text annotation | homologous HL_5J7L_194 HL_31585.4 | |
HL_3J9M_035 | 1/A/3038:3044 | No text annotation | homologous HL_7A0S_061 HL_30068.2 | |
HL_3J9M_036 | 1/A/3081:3086 | GNRA | homologous HL_5J7L_196 HL_37824.8 | |
HL_3J9M_037 | 1/A/3126:3131 | GNRA | geometric HL_3LQX_001 HL_37824.8 | |
HL_3J9M_038 | 1/A/3154:3159 | No text annotation | geometric HL_4V9F_005 HL_87954.2 | |
HL_3J9M_039 | 1/A/3176:3193 | No text annotation | ||
HL_3J9M_040 | 1/A/3216:3224 | No text annotation | geometric HL_7RQB_068 NA | |
HL_3J9M_041 | 1/AA/654:664 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
HL_3J9M_042 | 1/AA/701:708 | No text annotation | ||
HL_3J9M_043 | 1/AA/768:773 | GNRA variation | geometric HL_5TBW_033 NA | |
HL_3J9M_044 | 1/AA/792:796 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
HL_3J9M_045 | 1/AA/804:809 | Mini UNCG | geometric HL_5T16_002 HL_56334.1 | |
HL_3J9M_046 | 1/AA/842:847 | GNRA | geometric HL_6DME_001 HL_37824.8 | |
HL_3J9M_047 | 1/AA/894:899 | GNRA | geometric HL_1G1X_003 HL_37824.8 | |
HL_3J9M_048 | 1/AA/989:998 | No text annotation | geometric HL_5J7L_015 HL_75293.5 | |
HL_3J9M_049 | 1/AA/1023:1028 | GNRA | geometric HL_1G1X_005 HL_37824.8 | |
HL_3J9M_050 | 1/AA/1074:1084 | No text annotation | geometric HL_5J7L_017 HL_75293.5 | |
HL_3J9M_052 | 1/AA/1150:1155 | Mini UNCG | geometric HL_6AAX_001 HL_56334.1 | |
HL_3J9M_053 | 1/AA/1217:1226 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
HL_3J9M_054 | 1/AA/1281:1287 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
HL_3J9M_055 | 1/AA/1310:1315 | Externally structured | geometric HL_5TBW_022 NA | |
HL_3J9M_056 | 1/AA/1373:1379 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
HL_3J9M_058 | 1/AA/1440:1450 | No text annotation | homologous HL_6CZR_101 NA | |
HL_3J9M_059 | 1/AA/1522:1528 | No text annotation | geometric HL_5M3H_001 NA | |
HL_3J9M_060 | 1/AA/1580:1585 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
HL_3J9M_062 | 1/B/1630:1638 | Anticodon loop related | geometric HL_5T83_002 HL_06059.7 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_3J9M_008 | No text annotation | ||
HL_3J9M_012 | Externally structured | ||
HL_3J9M_019 | No text annotation | ||
HL_3J9M_063 | No text annotation | ||
HL_3J9M_025 | No text annotation | ||
HL_3J9M_028 | No text annotation | ||
HL_3J9M_051 | No text annotation | ||
HL_3J9M_057 | T-loop with 2 bulged bases not stacked | ||
HL_3J9M_061 | tRNA D-loop |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_3J9M_109 | 1/A/1672:1678, 1/A/1797:1816 | No text annotation | ||
IL_3J9M_001 | 1/A/1682:1683, 1/A/1768:1770 | Single bulged A | homologous IL_7A0S_002 IL_31462.7 | |
IL_3J9M_002 | 1/A/1739:1745, 1/A/1753:1758 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_106 IL_26307.2 | |
IL_3J9M_003 | 1/A/1845:1847, 1/A/1856:1858 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 IL_07785.1 | |
IL_3J9M_004 | 1/A/1862:1863, 1/A/2301:2303 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
IL_3J9M_005 | 1/A/1863:1865, 1/A/2300:2301 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
IL_3J9M_006 | 1/A/1875:1876, 1/A/1897:1899 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
IL_3J9M_007 | 1/A/1876:1879, 1/A/1895:1897 | No text annotation | geometric IL_4V84_070 NA | |
IL_3J9M_008 | 1/A/1880:1883, 1/A/1890:1894 | No text annotation | ||
IL_3J9M_009 | 1/A/1904:1906, 1/A/2016:2018 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
IL_3J9M_010 | 1/A/1906:1910, 1/A/2009:2016 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 IL_54041.2 | |
IL_3J9M_011 | 1/A/1913:1915, 1/A/2004:2006 | Isolated non-canonical cWW pair | geometric IL_5TBW_079 NA | |
IL_3J9M_012 | 1/A/1925:1927, 1/A/1977:1979 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 IL_44465.1 | |
IL_3J9M_013 | 1/A/1929:1930, 1/A/1973:1975 | Single bulged A | homologous IL_5J7L_261 IL_31462.7 | |
IL_3J9M_014 | 1/A/1948:1951, 1/A/1966:1968 | Major groove platform with extra cWW | homologous IL_7A0S_019 IL_51387.3 | |
IL_3J9M_015 | 1/A/1985:1987, 1/A/1997:2001 | Multiple bulged bases | homologous IL_5J7L_265 IL_06549.2 | |
IL_3J9M_016 | 1/A/2032:2033, 1/A/2041:2043 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
IL_3J9M_017 | 1/A/2033:2035, 1/A/2040:2041 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
IL_3J9M_018 | 1/A/2046:2048, 1/A/2091:2094 | Other IL | geometric IL_5TBW_064 NA | |
IL_3J9M_019 | 1/A/2057:2063, 1/A/2076:2082 | No text annotation | ||
IL_3J9M_020 | 1/A/2145:2147, 1/A/2254:2255 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
IL_3J9M_021 | 1/A/2149:2153, 1/A/2248:2252 | UAA/GAN | homologous IL_4WF9_036 IL_38507.2 | |
IL_3J9M_022 | 1/A/2168:2170, 1/A/2190:2192 | Isolated near basepair | geometric IL_2ZI0_001 IL_42997.3 | |
IL_3J9M_023 | 1/A/2170:2174, 1/A/2186:2190 | No text annotation | geometric IL_4V9F_043 NA | |
IL_3J9M_024 | 1/A/2197:2200, 1/A/2211:2212 | No text annotation | homologous IL_6PRV_002 NA | |
IL_3J9M_025 | 1/A/2306:2313, 1/A/2674:2680 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
IL_3J9M_026 | 1/A/2329:2333, 1/A/2441:2448 | No text annotation | ||
IL_3J9M_110 | 1/A/2377:2381, 1/A/2411:2419 | No text annotation | ||
IL_3J9M_111 | 1/A/2384:2400, 1/A/2403:2408 | No text annotation | ||
IL_3J9M_027 | 1/A/2456:2461, 1/A/2666:2668 | No text annotation | ||
IL_3J9M_028 | 1/A/2465:2466, 1/A/2660:2662 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
IL_3J9M_029 | 1/A/2466:2469, 1/A/2658:2660 | No text annotation | ||
IL_3J9M_030 | 1/A/2470:2473, 1/A/2656:2657 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 IL_50694.7 | |
IL_3J9M_112 | 1/A/2470:2478, 1/A/2653:2657 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
IL_3J9M_031 | 1/A/2473:2478, 1/A/2653:2656 | Intercalated tWH | geometric IL_5J7L_307 IL_76758.2 | |
IL_3J9M_032 | 1/A/2478:2487, 1/A/2648:2653 | No text annotation | ||
IL_3J9M_033 | 1/A/2490:2491, 1/A/2643:2645 | Single bulged A | homologous IL_5J7L_312 IL_31462.7 | |
IL_3J9M_034 | 1/A/2548:2551, 1/A/2566:2567 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
IL_3J9M_035 | 1/A/2552:2553, 1/A/2562:2565 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
IL_3J9M_036 | 1/A/2596:2597, 1/A/2627:2630 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
IL_3J9M_037 | 1/A/2597:2608, 1/A/2624:2627 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
IL_3J9M_038 | 1/A/2712:2715, 1/A/3104:3106 | Major groove platform with extra pair | geometric IL_5TBW_091 NA | |
IL_3J9M_039 | 1/A/2717:2719, 1/A/3099:3102 | No text annotation | homologous IL_4WF9_079 IL_83389.2 | |
IL_3J9M_040 | 1/A/2730:2732, 1/A/2929:2930 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
IL_3J9M_041 | 1/A/2733:2734, 1/A/2925:2928 | Minor groove platform | homologous IL_5J7L_324 IL_51454.3 | |
IL_3J9M_042 | 1/A/2744:2746, 1/A/2802:2803 | Minor groove platform | geometric IL_7A0S_003 IL_51454.3 | |
IL_3J9M_043 | 1/A/2747:2748, 1/A/2799:2801 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
IL_3J9M_044 | 1/A/2748:2750, 1/A/2798:2799 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
IL_3J9M_046 | 1/A/2856:2860, 1/A/2872:2876 | Triple sheared | geometric IL_5J7L_274 IL_17948.2 | |
IL_3J9M_047 | 1/A/2940:2941, 1/A/2985:2987 | Single stack bend | geometric IL_4WF9_089 IL_26793.1 | |
IL_3J9M_048 | 1/A/2941:2942, 1/A/2983:2985 | Major groove platform | homologous IL_7A0S_084 IL_48076.6 | |
IL_3J9M_049 | 1/A/2943:2946, 1/A/2980:2982 | Major groove platform with extra pair | geometric IL_7RQB_093 NA | |
IL_3J9M_050 | 1/A/2946:2948, 1/A/2976:2980 | Major groove minor groove platform with extra cWW | homologous IL_4WF9_092 IL_51387.3 | |
IL_3J9M_051 | 1/A/2953:2955, 1/A/2968:2971 | No text annotation | geometric IL_4P3T_002 NA | |
IL_3J9M_052 | 1/A/2955:2957, 1/A/2967:2968 | Minor groove platform | geometric IL_4V88_412 NA | |
IL_3J9M_053 | 1/A/2994:2995, 1/A/3067:3069 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
IL_3J9M_054 | 1/A/2997:2999, 1/A/3061:3065 | Isolated non-canonical cWW with bulges | geometric IL_4WF9_095 IL_07785.1 | |
IL_3J9M_055 | 1/A/2999:3000, 1/A/3058:3061 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
IL_3J9M_056 | 1/A/3008:3010, 1/A/3027:3031 | No text annotation | ||
IL_3J9M_057 | 1/A/3078:3079, 1/A/3088:3090 | Single bulged A | homologous IL_5J7L_344 IL_31462.7 | |
IL_3J9M_058 | 1/A/3115:3117, 1/A/3139:3141 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
IL_3J9M_059 | 1/A/3119:3126, 1/A/3131:3137 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
IL_3J9M_060 | 1/A/3148:3152, 1/A/3161:3163 | Major groove minor groove platform with tHH | geometric IL_4WF9_050 IL_83150.2 | |
IL_3J9M_061 | 1/AA/649:651, 1/AA/667:668 | No text annotation | ||
IL_3J9M_062 | 1/AA/674:676, 1/AA/921:923 | Intercalated cWW | geometric IL_7A0S_044 IL_31737.3 | |
IL_3J9M_063 | 1/AA/685:686, 1/AA/859:861 | Single bulged A | geometric IL_5J7L_002 IL_31462.7 | |
IL_3J9M_064 | 1/AA/690:692, 1/AA/822:823 | Single bulged A | geometric IL_4R4V_004 IL_31462.7 | |
IL_3J9M_065 | 1/AA/694:696, 1/AA/819:820 | Minor groove platform | geometric IL_4LFB_004 IL_51454.3 | |
IL_3J9M_066 | 1/AA/727:729, 1/AA/744:747 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
IL_3J9M_067 | 1/AA/729:732, 1/AA/742:744 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
IL_3J9M_068 | 1/AA/756:761, 1/AA/779:786 | Kink-turn with non-sequential stacking | geometric IL_4LFB_011 IL_46174.3 | |
IL_3J9M_069 | 1/AA/762:765, 1/AA/777:778 | Major groove platform; stack outside cWW | geometric IL_1NTA_003 IL_50694.7 | |
IL_3J9M_113 | 1/AA/762:766, 1/AA/775:778 | No text annotation | ||
IL_3J9M_070 | 1/AA/765:766, 1/AA/775:777 | No text annotation | ||
IL_3J9M_071 | 1/AA/830:832, 1/AA/855:856 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
IL_3J9M_072 | 1/AA/834:838, 1/AA/852:853 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
IL_3J9M_073 | 1/AA/838:839, 1/AA/850:852 | Single bulged A | geometric IL_2QUX_002 IL_31462.7 | |
IL_3J9M_074 | 1/AA/876:885, 1/AA/910:913 | No text annotation | ||
IL_3J9M_075 | 1/AA/887:893, 1/AA/900:908 | Kink-turn related | geometric IL_4V88_415 NA | |
IL_3J9M_076 | 1/AA/935:941, 1/AA/1133:1134 | No text annotation | geometric IL_5J7L_026 IL_38186.6 | |
IL_3J9M_077 | 1/AA/946:950, 1/AA/1044:1049 | No text annotation | ||
IL_3J9M_078 | 1/AA/974:980, 1/AA/1008:1014 | No text annotation | ||
IL_3J9M_079 | 1/AA/982:984, 1/AA/1004:1006 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
IL_3J9M_080 | 1/AA/986:988, 1/AA/999:1002 | No text annotation | ||
IL_3J9M_081 | 1/AA/1020:1022, 1/AA/1029:1030 | Other IL | geometric IL_3WBM_004 IL_81831.1 | |
IL_3J9M_082 | 1/AA/1062:1066, 1/AA/1092:1093 | Left turn | geometric IL_5J7L_036 IL_29346.2 | |
IL_3J9M_083 | 1/AA/1067:1071, 1/AA/1087:1091 | tSH-tHW-tHS | geometric IL_5J7L_037 IL_17136.7 | |
IL_3J9M_084 | 1/AA/1109:1111, 1/AA/1130:1132 | Isolated non-canonical cWW pair | geometric IL_1Z7F_002 NA | |
IL_3J9M_085 | 1/AA/1139:1147, 1/AA/1158:1164 | No text annotation | ||
IL_3J9M_086 | 1/AA/1175:1176, 1/AA/1477:1479 | Single bulged A | geometric IL_6CZR_147 NA | |
IL_3J9M_087 | 1/AA/1178:1180, 1/AA/1474:1475 | Single bulged G | geometric IL_6CZR_148 NA | |
IL_3J9M_088 | 1/AA/1186:1190, 1/AA/1464:1468 | C-loop | geometric IL_1KOG_007 IL_63596.11 | |
IL_3J9M_089 | 1/AA/1208:1209, 1/AA/1355:1357 | Minor groove platform | geometric IL_7A0S_028 IL_51454.3 | |
IL_3J9M_090 | 1/AA/1244:1252, 1/AA/1340:1345 | No text annotation | ||
IL_3J9M_091 | 1/AA/1253:1255, 1/AA/1338:1339 | Single bulged C | geometric IL_6ZDP_001 IL_61258.15 | |
IL_3J9M_092 | 1/AA/1257:1261, 1/AA/1334:1336 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
IL_3J9M_093 | 1/AA/1262:1263, 1/AA/1329:1333 | Minor groove platform | geometric IL_3RW6_003 IL_95583.2 | |
IL_3J9M_094 | 1/AA/1265:1266, 1/AA/1325:1327 | Single bulged A | geometric IL_5J7L_049 IL_31462.7 | |
IL_3J9M_095 | 1/AA/1266:1268, 1/AA/1323:1325 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
IL_3J9M_096 | 1/AA/1274:1277, 1/AA/1298:1301 | Double sheared | geometric IL_1SA9_002 IL_09705.15 | |
IL_3J9M_097 | 1/AA/1278:1279, 1/AA/1289:1297 | No text annotation | geometric IL_8S95_001 IL_73452.2 | |
IL_3J9M_098 | 1/AA/1388:1393, 1/AA/1413:1418 | No text annotation | geometric IL_5J7L_057 IL_85536.2 | |
IL_3J9M_099 | 1/AA/1483:1485, 1/AA/1566:1569 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
IL_3J9M_100 | 1/AA/1485:1488, 1/AA/1562:1566 | No text annotation | geometric IL_4V88_464 NA | |
IL_3J9M_101 | 1/AA/1489:1491, 1/AA/1559:1561 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_87907.2 | |
IL_3J9M_103 | 1/AA/1500:1504, 1/AA/1546:1549 | UAA/GAN variation | geometric IL_2R8S_002 IL_77691.5 | |
IL_3J9M_104 | 1/AA/1507:1510, 1/AA/1540:1543 | Tandem non-canonical cWW pairs | geometric IL_5TBW_128 NA | |
IL_3J9M_105 | 1/AA/1510:1511, 1/AA/1538:1540 | No text annotation | ||
IL_3J9M_106 | 1/AA/1511:1514, 1/AA/1535:1538 | No text annotation | ||
IL_3J9M_108 | 1/B/1627:1629, 1/B/1639:1641 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_87907.2 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_3J9M_045 | No text annotation | ||
IL_3J9M_102 | No text annotation | ||
IL_3J9M_107 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_3J9M_015 | 1/A/1672:1678, 1/A/1797:1803, 1/A/1807:1816 | No text annotation | ||
J3_3J9M_001 | 1/A/1678:1681, 1/A/1771:1785, 1/A/1792:1797 | No text annotation | ||
J3_3J9M_002 | 1/A/1915:1921, 1/A/1983:1985, 1/A/2001:2004 | No text annotation | homologous J3_7A0S_004 J3_64189.2 | |
J3_3J9M_003 | 1/A/1930:1932, 1/A/1942:1946, 1/A/1970:1973 | No text annotation | homologous J3_5J7L_039 J3_44724.7 | |
J3_3J9M_004 | 1/A/2336:2343, 1/A/2423:2427, 1/A/2436:2438 | No text annotation | ||
J3_3J9M_005 | 1/A/2343:2345, 1/A/2368:2375, 1/A/2421:2423 | No text annotation | ||
J3_3J9M_016 | 1/A/2846:2848, 1/A/2890:2900, 1/A/2909:2915 | No text annotation | ||
J3_3J9M_006 | 1/A/3004:3007, 1/A/3032:3034, 1/A/3048:3054 | No text annotation | homologous J3_4WF9_009 J3_32601.5 | |
J3_3J9M_007 | 1/AA/677:680, 1/AA/866:872, 1/AA/917:920 | No text annotation | ||
J3_3J9M_008 | 1/AA/687:690, 1/AA/823:830, 1/AA/856:858 | No text annotation | ||
J3_3J9M_009 | 1/AA/973:974, 1/AA/1014:1020, 1/AA/1030:1031 | No text annotation | ||
J3_3J9M_010 | 1/AA/1192:1194, 1/AA/1428:1434, 1/AA/1456:1462 | No text annotation | ||
J3_3J9M_011 | 1/AA/1198:1201, 1/AA/1364:1366, 1/AA/1421:1424 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
J3_3J9M_012 | 1/AA/1210:1216, 1/AA/1227:1238, 1/AA/1351:1354 | No text annotation | ||
J3_3J9M_013 | 1/AA/1268:1273, 1/AA/1302:1308, 1/AA/1317:1323 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
J4_3J9M_001 | 1/A/2314:2317, 1/A/2326:2327, 1/A/2450:2453, 1/A/2671:2673 | No text annotation | ||
J4_3J9M_002 | 1/A/2336:2345, 1/A/2368:2375, 1/A/2421:2427, 1/A/2436:2438 | No text annotation | ||
J4_3J9M_003 | 1/A/2492:2496, 1/A/2508:2513, 1/A/2537:2542, 1/A/2637:2642 | No text annotation | ||
J4_3J9M_004 | 1/A/2544:2546, 1/A/2569:2570, 1/A/2587:2596, 1/A/2630:2635 | No text annotation | homologous J4_5J7L_026 J4_93343.1 | |
J4_3J9M_005 | 1/AA/698:701, 1/AA/708:715, 1/AA/800:802, 1/AA/811:817 | No text annotation | ||
J4_3J9M_006 | 1/AA/717:725, 1/AA/749:753, 1/AA/789:791, 1/AA/797:798 | No text annotation | ||
J4_3J9M_007 | 1/AA/941:943, 1/AA/1052:1057, 1/AA/1098:1109, 1/AA/1132:1133 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
J5_3J9M_001 | 1/A/1827:1829, 1/A/1841:1845, 1/A/1858:1860, 1/A/2305:2306, 1/A/2680:2681 | No text annotation | homologous J5_7A0S_003 J5_43153.5 | |
J5_3J9M_002 | 1/A/1865:1875, 1/A/1899:1903, 1/A/2019:2022, 1/A/2271:2275, 1/A/2290:2300 | No text annotation | ||
J5_3J9M_003 | 1/A/2720:2727, 1/A/2933:2940, 1/A/2987:2994, 1/A/3069:3075, 1/A/3093:3098 | No text annotation | ||
J5_3J9M_004 | 1/A/2737:2741, 1/A/2806:2810, 1/A/2822:2823, 1/A/2845:2846, 1/A/2915:2922 | No text annotation | ||
J6_3J9M_001 | 1/A/2027:2032, 1/A/2043:2045, 1/A/2095:2098, 1/A/2123:2127, 1/A/2138:2143, 1/A/2257:2266 | No text annotation | ||
J6_3J9M_002 | 1/A/2737:2741, 1/A/2806:2810, 1/A/2822:2823, 1/A/2845:2848, 1/A/2890:2900, 1/A/2909:2922 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_3J9M_014 | No text annotation |
Coloring options: