HL_3J9M_007

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGAGC

Length

6 nucleotides

Bulged bases

3J9M|1|A|G|1886

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_007 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.1486

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3J9M|1|A|G|1884
3J9M|1|A|A|1885
3J9M|1|A|G|1886
3J9M|1|A|A|1887
3J9M|1|A|G|1888
3J9M|1|A|C|1889

Current chains

Chain A

16S rRNA

Nearby chains

Chain 3

bL35m

Chain F

uL4m

Chain M

uL15m

Chain g

mL49

Chain i

mL51