HL_3J9M_008

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAAGA

Length

5 nucleotides

Bulged bases

3J9M|1|A|G|1939

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_008 not in the Motif Atlas

Geometric match to HL_5J7L_025

Geometric discrepancy: 0.2444

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

3J9M|1|A|U|1934
3J9M|1|A|A|1935
3J9M|1|A|A|1938
3J9M|1|A|G|1939
3J9M|1|A|A|1940

Current chains

Chain A

16S rRNA

Nearby chains

Chain 5

mL37

Chain A3

mS38

Chain D

uL2m