HL_3J9M_011

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUUAG

Length

6 nucleotides

Bulged bases

3J9M|1|A|C|2036, 3J9M|1|A|A|2039

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_011 not in the Motif Atlas

Geometric match to HL_4WF9_025

Geometric discrepancy: 0.2158

The information below is about HL_4WF9_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

3J9M|1|A|U|2035
3J9M|1|A|C|2036
3J9M|1|A|U|2037
3J9M|1|A|U|2038
3J9M|1|A|A|2039
3J9M|1|A|G|2040

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

uL15m