HL_3J9M_017

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCACCCUA

Length

8 nucleotides

Bulged bases

3J9M|1|A|C|2283, 3J9M|1|A|C|2284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_017 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3006

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

3J9M|1|A|U|2279
3J9M|1|A|C|2280
3J9M|1|A|A|2281
3J9M|1|A|C|2282
3J9M|1|A|C|2283
3J9M|1|A|C|2284
3J9M|1|A|U|2285
3J9M|1|A|A|2286

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

uL4m

Chain M

uL15m

Chain R

bL20m

Chain b

mL43

Chain c

mL44

Chain h

mL50

Chain i

mL51

Chain o

mL63