HL_3J9M_021

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

3J9M|1|A|A|2432, 3J9M|1|A|A|2434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_021 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1452

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

3J9M|1|A|C|2428
3J9M|1|A|A|2429
3J9M|1|A|A|2430
3J9M|1|A|C|2431
3J9M|1|A|A|2432
3J9M|1|A|C|2433
3J9M|1|A|A|2434
3J9M|1|A|G|2435

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

bL34m

Chain 9

mL41

Chain T

uL22m