HL_3J9M_033

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_033 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.2064

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3J9M|1|A|A|2958
3J9M|1|A|G|2959
3J9M|1|A|U|2960
3J9M|1|A|C|2961
3J9M|1|A|C|2962
3J9M|1|A|A|2963
3J9M|1|A|U|2964
3J9M|1|A|A|2965
3J9M|1|A|U|2966

Current chains

Chain A

16S rRNA

Nearby chains

Chain 4

bL36m

Chain N

uL16m