HL_3J9W_058

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUUGAAAAG

Length

10 nucleotides

Bulged bases

3J9W|1|BA|U|794, 3J9W|1|BA|A|798, 3J9W|1|BA|A|799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01306.1

Basepair signature

cWW-R-tSW-R-R

Number of instances in this motif group

10

Unit IDs

3J9W|1|BA|C|791
3J9W|1|BA|G|792
3J9W|1|BA|U|793
3J9W|1|BA|U|794
3J9W|1|BA|G|795
3J9W|1|BA|A|796
3J9W|1|BA|A|797
3J9W|1|BA|A|798
3J9W|1|BA|A|799
3J9W|1|BA|G|800

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AZ

MifM

Chain B4

50S ribosomal protein bL32

Chain B6

50S ribosomal protein bL34

Chain BE

50S ribosomal protein uL3

Chain BV

50S ribosomal protein uL22