RNA 3D Hub //

3J9W Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3J9W_0011/AA/14:24No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_3J9W_0021/AA/82:87No text annotation
HL_3J9W_0031/AA/157:162GNRA
homologous
HL_5J7L_003
HL_37824.7
HL_3J9W_0041/AA/192:197No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_3J9W_0051/AA/217:222UNCG
homologous
HL_5J7L_005
HL_34617.5
HL_3J9W_0061/AA/267:275GNRA related
homologous
HL_4LFB_006
HL_84299.4
HL_3J9W_0071/AA/304:309GNRA
homologous
HL_5J7L_007
HL_37824.7
HL_3J9W_0081/AA/328:341No text annotation
homologous
HL_5J7L_008
HL_81205.3
HL_3J9W_0091/AA/350:355UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_3J9W_0101/AA/387:392GNRA
homologous
HL_5J7L_010
HL_37824.7
HL_3J9W_0111/AA/427:432UNCG
homologous
HL_4LFB_011
HL_34617.5
HL_3J9W_0121/AA/472:478GNRA
geometric
HL_1XJR_001
HL_37824.7
HL_3J9W_0131/AA/531:536No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_3J9W_0141/AA/626:632No text annotation
homologous
HL_5J7L_014
HL_10453.3
HL_3J9W_0151/AA/698:707No text annotation
homologous
HL_5J7L_015
HL_75293.5
HL_3J9W_0161/AA/735:740GNRA
homologous
HL_5J7L_016
HL_37824.7
HL_3J9W_0171/AA/795:805No text annotation
homologous
HL_5J7L_017
HL_75293.5
HL_3J9W_0181/AA/849:856No text annotation
geometric
HL_4WF9_041
NA
HL_3J9W_0191/AA/872:877GNRA
homologous
HL_4LFB_019
HL_37824.7
HL_3J9W_0201/AA/907:912GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_3J9W_0211/AA/973:982No text annotation
homologous
HL_4LFB_021
HL_50779.4
HL_3J9W_0221/AA/1022:1027GNRA
homologous
HL_4LFB_022
HL_37824.7
HL_3J9W_0231/AA/1038:1043UNCG variation
geometric
HL_6DLR_001
HL_56676.1
HL_3J9W_0241/AA/1086:1091GNRA
homologous
HL_4LFB_024
HL_37824.7
HL_3J9W_0251/AA/1099:1106T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_3J9W_0261/AA/1143:1150T-loop related
geometric
HL_4LFB_025
HL_77436.5
HL_3J9W_0271/AA/1174:1180GNRA
homologous
HL_4LFB_027
HL_37824.7
HL_3J9W_0281/AA/1274:1279GNRA
homologous
HL_4LFB_028
HL_37824.7
HL_3J9W_0291/AA/1323:1332T-loop with 3 stacked bulged bases
homologous
HL_5J7L_028
HL_02887.3
HL_3J9W_0301/AA/1365:1375No text annotation
homologous
HL_5J7L_029
HL_06226.4
HL_3J9W_0311/AA/1459:1463No text annotation
geometric
HL_5TBW_006
NA
HL_3J9W_0321/AA/1525:1530GNRA
homologous
HL_4LFB_032
HL_37824.7
HL_3J9W_0331/AX/13:22tRNA D-loop
homologous
HL_4TUE_033
HL_93616.2
HL_3J9W_0341/AX/31:39No text annotation
homologous
HL_4V8N_144
NA
HL_3J9W_0351/AX/53:61T-loop with 2 stacked bulged bases
homologous
HL_4WJ4_003
HL_28252.7
HL_3J9W_0361/BA/59:68No text annotation
homologous
HL_5J7L_134
HL_35677.3
HL_3J9W_0371/BA/87:95Pseudoknot geometry
homologous
HL_4WF9_002
HL_77600.2
HL_3J9W_0381/BA/122:127No text annotation
homologous
HL_4WF9_003
HL_75660.5
HL_3J9W_0391/BA/136:143GNRA wlth tandem sheared
homologous
HL_4WF9_004
HL_81538.2
HL_3J9W_0401/BA/159:169No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_3J9W_0411/BA/197:204No text annotation
geometric
HL_5J7L_139
HL_30068.2
HL_3J9W_0421/BA/228:233No text annotation
homologous
HL_4WF9_007
HL_53890.2
HL_3J9W_0431/BA/249:255No text annotation
homologous
HL_4WF9_008
HL_37369.2
HL_3J9W_0441/BA/283:288No text annotation
HL_3J9W_0451/BA/349:356T-loop with 1 bulged base
homologous
HL_7A0S_010
HL_01609.3
HL_3J9W_0461/BA/363:367No text annotation
homologous
HL_5J7L_143
HL_75660.5
HL_3J9W_0471/BA/371:379T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_3J9W_0481/BA/429:439No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_3J9W_0491/BA/457:464Pseudoknot geometry
homologous
HL_5J7L_146
HL_30680.3
HL_3J9W_0501/BA/509:514GNRA
homologous
HL_4WF9_015
HL_37824.7
HL_3J9W_0511/BA/534:539GNRA
homologous
HL_7A0S_016
HL_37824.7
HL_3J9W_0521/BA/588:595No text annotation
homologous
HL_4WF9_017
HL_50318.1
HL_3J9W_0531/BA/610:619T-loop with 2 stacked bulged bases
geometric
HL_4WF9_018
HL_28252.7
HL_3J9W_0541/BA/656:662No text annotation
geometric
HL_3IGI_004
HL_04783.2
HL_3J9W_0551/BA/675:680GNRA
homologous
HL_5J7L_152
HL_37824.7
HL_3J9W_0561/BA/687:693No text annotation
homologous
HL_7RQB_021
NA
HL_3J9W_0571/BA/759:766GNRA wlth tandem sheared
geometric
HL_5AOX_001
HL_81538.2
HL_3J9W_0581/BA/791:800No text annotation
homologous
HL_4WF9_023
HL_88205.2
HL_3J9W_0591/BA/826:832No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_3J9W_0601/BA/873:878No text annotation
homologous
HL_4WF9_025
HL_55195.3
HL_3J9W_0611/BA/932:938No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_3J9W_0621/BA/1001:1008GNRA
homologous
HL_7A0S_026
HL_37824.7
HL_3J9W_0631/BA/1024:1031No text annotation
homologous
HL_5J7L_160
HL_42998.2
HL_3J9W_0641/BA/1110:1120No text annotation
homologous
HL_5J7L_161
HL_19210.3
HL_3J9W_0651/BA/1138:1145GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_81538.2
HL_3J9W_0661/BA/1216:1220Mini UNCG
geometric
HL_4YAZ_004
HL_48778.2
HL_3J9W_0671/BA/1262:1267GNRA
homologous
HL_4WF9_031
HL_37824.7
HL_3J9W_0681/BA/1320:1328T-loop with 2 stacked bulged bases
homologous
HL_4WF9_032
HL_28252.7
HL_3J9W_0691/BA/1363:1369Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_3J9W_0701/BA/1402:1407GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_3J9W_0711/BA/1428:1437No text annotation
homologous
HL_7RQB_036
NA
HL_3J9W_0721/BA/1496:1507Other HL
geometric
HL_5J7L_200
HL_08100.1
HL_3J9W_0731/BA/1538:1544Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
HL_57176.2
HL_3J9W_0741/BA/1577:1589No text annotation
HL_3J9W_0751/BA/1613:1616Mini UNCG
homologous
HL_7A0S_039
HL_48778.2
HL_3J9W_0761/BA/1657:1664No text annotation
homologous
HL_7RQB_040
NA
HL_3J9W_0771/BA/1675:1681GNRA
homologous
HL_5J7L_174
HL_37824.7
HL_3J9W_0781/BA/1736:1741UNCG
geometric
HL_4PMI_004
HL_34617.5
HL_3J9W_0791/BA/1764:1769No text annotation
homologous
HL_7RQB_043
NA
HL_3J9W_0801/BA/1781:1785No text annotation
homologous
HL_7A0S_044
HL_80709.3
HL_3J9W_0811/BA/1806:1816No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_3J9W_0821/BA/1835:1840GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_3J9W_0831/BA/1897:1902GNRA
homologous
HL_7A0S_047
HL_37824.7
HL_3J9W_0841/BA/1939:1949No text annotation
geometric
HL_5TBW_049
NA
HL_3J9W_0851/BA/1978:1986No text annotation
homologous
HL_5J7L_182
HL_20167.2
HL_3J9W_0861/BA/2056:2065No text annotation
homologous
HL_7RQB_050
NA
HL_3J9W_0871/BA/2172:2177No text annotation
homologous
HL_5J7L_184
NA
HL_3J9W_0881/BA/2238:2244No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_3J9W_0891/BA/2277:2285No text annotation
homologous
HL_7RQB_053
NA
HL_3J9W_0901/BA/2293:2305No text annotation
homologous
HL_4WF9_050
HL_91939.2
HL_3J9W_1101/BA/2333:2341No text annotation
homologous
HL_5J7L_219
HL_50860.2
HL_3J9W_0921/BA/2353:2360Pseudoknot geometry
homologous
HL_7A0S_055
HL_93324.4
HL_3J9W_0931/BA/2384:2391GNRA with extra cWW
homologous
HL_4WF9_053
HL_04259.3
HL_3J9W_0941/BA/2403:2408GNRA
homologous
HL_5J7L_191
HL_37824.7
HL_3J9W_0951/BA/2433:2442No text annotation
homologous
HL_7A0S_058
HL_53454.2
HL_3J9W_0961/BA/2500:2508No text annotation
homologous
HL_7A0S_059
HL_32735.2
HL_3J9W_0971/BA/2557:2564No text annotation
homologous
HL_7RQB_061
NA
HL_3J9W_0981/BA/2580:2586No text annotation
homologous
HL_7A0S_061
HL_30068.2
HL_3J9W_0991/BA/2623:2628GNRA
homologous
HL_7RQB_063
NA
HL_3J9W_1001/BA/2687:2692GNRA
homologous
HL_7A0S_063
HL_37824.7
HL_3J9W_1011/BA/2730:2735Ribsomal LSU H95
homologous
HL_7A0S_064
HL_65794.5
HL_3J9W_1021/BA/2774:2788No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_3J9W_1031/BA/2823:2828GNRA related
geometric
HL_5J7L_179
HL_04783.2
HL_3J9W_1041/BA/2844:2852No text annotation
homologous
HL_5J7L_201
HL_64690.6
HL_3J9W_1051/BA/2881:2886GNRA
homologous
HL_5J7L_202
HL_37824.7
HL_3J9W_1061/BB/36:42No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_3J9W_1071/BB/84:88Mini UNCG
homologous
HL_5J7L_204
HL_48778.2

Problematic loops

#loop idProblemSequence
HL_3J9W_108No text annotation
HL_3J9W_109No text annotation
HL_3J9W_091No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3J9W_0011/AA/32:34,
1/AA/561:562		Single bulged G
homologous
IL_4LFB_001
IL_00225.13
IL_3J9W_0021/AA/46:47,
1/AA/404:406		Single bulged A
homologous
IL_5J7L_002
IL_31462.5
IL_3J9W_0031/AA/49:54,
1/AA/367:369		No text annotation
geometric
IL_5J7L_003
IL_14177.2
IL_3J9W_0041/AA/56:58,
1/AA/364:365		Minor groove platform
homologous
IL_4LFB_004
IL_51454.2
IL_3J9W_0051/AA/65:68,
1/AA/101:102		Multiple bulged bases
homologous
IL_4LFB_005
IL_82107.4
IL_3J9W_0061/AA/69:71,
1/AA/98:100		Isolated non-canonical cWW pair
homologous
IL_6CZR_118
NA
IL_3J9W_0071/AA/74:78,
1/AA/91:95		Triple sheared
geometric
IL_4WFL_001
IL_17948.2
IL_3J9W_1941/AA/127:130,
1/AA/239:240		Multiple bulged bases
homologous
IL_6CZR_119
NA
IL_3J9W_0091/AA/131:135,
1/AA/235:238		No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_3J9W_0101/AA/146:152,
1/AA/167:174		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_3J9W_0111/AA/250:255,
1/AA/285:292		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_3J9W_1851/AA/257:260,
1/AA/282:283		No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_3J9W_0131/AA/300:301,
1/AA/312:316		C-loop
homologous
IL_6CZR_125
NA
IL_3J9W_0141/AA/379:383,
1/AA/397:398		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_3J9W_0151/AA/383:384,
1/AA/395:397		Single bulged G
homologous
IL_5J7L_019
IL_00225.13
IL_3J9W_0161/AA/417:424,
1/AA/435:441		No text annotation
homologous
IL_5J7L_020
IL_28026.3
IL_3J9W_0171/AA/448:449,
1/AA/502:506		Major groove minor groove platform; mini C-loop
geometric
IL_1U9S_004
IL_68140.4
IL_3J9W_1861/AA/454:463,
1/AA/488:497		No text annotation
IL_3J9W_1871/AA/463:464,
1/AA/486:488		Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_3J9W_0181/AA/513:520,
1/AA/549:550		SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_3J9W_0191/AA/524:530,
1/AA/537:545		Kink-turn related
geometric
IL_4V88_415
NA
IL_3J9W_0201/AA/578:584,
1/AA/890:891		No text annotation
homologous
IL_4LFB_022
IL_38186.6
IL_3J9W_0211/AA/589:593,
1/AA/766:770		tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_3J9W_0221/AA/603:605,
1/AA/653:654		Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_3J9W_0231/AA/606:607,
1/AA/649:652		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
IL_68140.4
IL_3J9W_0241/AA/613:614,
1/AA/641:643		Single bulged U
geometric
IL_8P4V_145
NA
IL_3J9W_0251/AA/614:621,
1/AA/637:641		No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_3J9W_0261/AA/663:664,
1/AA/760:763		Major groove platform; stack outside cWW
geometric
IL_4LFB_027
IL_50694.7
IL_3J9W_0271/AA/666:668,
1/AA/755:758		No text annotation
geometric
IL_4V9F_072
IL_55516.2
IL_3J9W_0281/AA/671:675,
1/AA/749:752		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_3J9W_1881/AA/682:686,
1/AA/722:726		Triple non-canonical cWW pairs
homologous
IL_5J7L_361
IL_49751.4
IL_3J9W_0301/AA/693:697,
1/AA/708:715		Kink-turn
homologous
IL_5J7L_035
IL_01488.3
IL_3J9W_0311/AA/783:787,
1/AA/813:814		Left turn
homologous
IL_5J7L_036
IL_29346.2
IL_3J9W_0321/AA/788:792,
1/AA/808:812		tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.7
IL_3J9W_0331/AA/897:904,
1/AA/915:920		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_3J9W_1951/AA/932:933,
1/AA/1402:1404		Single bulged A
homologous
IL_4LFB_035
IL_31462.5
IL_3J9W_0351/AA/935:937,
1/AA/1399:1400		Single bulged G
homologous
IL_4LFB_036
IL_00225.13
IL_3J9W_0361/AA/943:945,
1/AA/1389:1393		Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_3J9W_0371/AA/963:964,
1/AA/1235:1237		Minor groove platform
homologous
IL_4LFB_038
IL_51454.2
IL_3J9W_0381/AA/1003:1007,
1/AA/1054:1055		Minor groove platform
homologous
IL_5J7L_043
IL_47078.3
IL_3J9W_0391/AA/1008:1009,
1/AA/1051:1053		Single stack bend
homologous
IL_5J7L_044
IL_26793.1
IL_3J9W_1891/AA/1010:1018,
1/AA/1031:1050		No text annotation
IL_3J9W_0401/AA/1058:1060,
1/AA/1217:1218		Single bulged U
homologous
IL_5J7L_046
IL_89505.4
IL_3J9W_0411/AA/1062:1066,
1/AA/1213:1215		Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_3J9W_0421/AA/1067:1068,
1/AA/1208:1212		Minor groove platform
homologous
IL_6CZR_155
NA
IL_3J9W_0431/AA/1070:1071,
1/AA/1204:1206		Single bulged A
homologous
IL_5J7L_049
IL_31462.5
IL_3J9W_0441/AA/1071:1073,
1/AA/1202:1204		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
IL_28037.2
IL_3J9W_1961/AA/1134:1137,
1/AA/1154:1158		Minor groove platform
homologous
IL_6CZR_158
NA
IL_3J9W_0461/AA/1139:1142,
1/AA/1151:1152		Minor groove platform
homologous
IL_5J7L_052
IL_15052.4
IL_3J9W_0471/AA/1167:1170,
1/AA/1184:1190		No text annotation
geometric
IL_4LFB_050
IL_42032.1
IL_3J9W_0481/AA/1256:1262,
1/AA/1293:1299		No text annotation
homologous
IL_5J7L_054
IL_09129.2
IL_3J9W_0491/AA/1264:1267,
1/AA/1286:1291		180 degree turn
homologous
IL_4LFB_052
IL_11344.2
IL_3J9W_0501/AA/1268:1272,
1/AA/1281:1285		Triple sheared
homologous
IL_5J7L_056
IL_17948.2
IL_3J9W_0511/AA/1312:1317,
1/AA/1338:1343		No text annotation
geometric
IL_5J7L_057
IL_85536.2
IL_3J9W_0521/AA/1408:1410,
1/AA/1511:1514		No text annotation
geometric
IL_4V88_463
NA
IL_3J9W_0531/AA/1410:1413,
1/AA/1507:1511		No text annotation
geometric
IL_4V88_464
NA
IL_3J9W_0541/AA/1414:1416,
1/AA/1504:1506		Isolated non-canonical cWW pair
geometric
IL_5Y85_006
IL_87907.2
IL_3J9W_0551/AA/1416:1418,
1/AA/1501:1504		Decoding loop related
geometric
IL_2O3X_003
IL_31737.3
IL_3J9W_0561/AA/1421:1423,
1/AA/1496:1498		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_3J9W_0571/AA/1425:1428,
1/AA/1491:1494		Double sheared
homologous
IL_6CZR_169
NA
IL_3J9W_0581/AA/1433:1436,
1/AA/1483:1486		Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_3J9W_0591/AA/1439:1444,
1/AA/1476:1480		Triple sheared related
geometric
IL_5J7L_063
IL_80231.1
IL_3J9W_0601/AA/1444:1446,
1/AA/1474:1476		Isolated non-canonical cWW pair
homologous
IL_4LFB_063
IL_87907.2
IL_3J9W_0611/AA/1449:1452,
1/AA/1469:1471		Isolated tHS basepair with bulges
geometric
IL_7RQB_012
NA
IL_3J9W_0621/AA/1454:1457,
1/AA/1465:1467		No text annotation
homologous
IL_5J7L_065
IL_31531.3
IL_3J9W_0631/AA/1545:1547,
1/AY/6:8		Isolated non-canonical cWW pair
geometric
IL_4J39_001
IL_87907.2
IL_3J9W_0641/AA/1547:1549,
1/AY/4:6		No text annotation
geometric
IL_1L9A_003
NA
IL_3J9W_0651/BA/24:30,
1/BA/556:562		Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
IL_04021.2
IL_3J9W_0661/BA/36:37,
1/BA/489:491		Single bulged A
homologous
IL_7A0S_002
IL_31462.5
IL_3J9W_1971/BA/43:44,
1/BA/481:483		Minor groove platform
homologous
IL_5J7L_247
IL_51454.2
IL_3J9W_0681/BA/81:85,
1/BA/97:104		Kink-turn
homologous
IL_7RQB_004
NA
IL_3J9W_0691/BA/152:153,
1/BA/175:177		Single bulged A
homologous
IL_4WF9_006
IL_31462.5
IL_3J9W_0701/BA/191:197,
1/BA/204:211		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_006
NA
IL_3J9W_0711/BA/241:248,
1/BA/256:262		8x7 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_009
IL_04346.10
IL_3J9W_1981/BA/305:306,
1/BA/410:413		Major groove minor groove platform; mini C-loop
geometric
IL_1S03_007
IL_68140.4
IL_3J9W_0731/BA/310:316,
1/BA/404:406		No text annotation
IL_3J9W_0741/BA/319:327,
1/BA/400:401		No text annotation
IL_3J9W_0751/BA/336:338,
1/BA/387:391		No text annotation
homologous
IL_5J7L_254
IL_69440.3
IL_3J9W_0761/BA/344:346,
1/BA/359:360		Single bulged A
geometric
IL_3MJA_001
NA
IL_3J9W_0771/BA/528:531,
1/BA/542:555		No text annotation
geometric
IL_5J7L_255
IL_81516.2
IL_3J9W_0781/BA/582:585,
1/BA/598:601		Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_3J9W_0791/BA/608:610,
1/BA/619:621		Isolated non-canonical cWW pair
homologous
IL_4WF9_017
IL_07785.1
IL_3J9W_0801/BA/639:641,
1/BA/707:709		Isolated non-canonical cWW pair
homologous
IL_4WF9_018
IL_07785.1
IL_3J9W_0811/BA/650:654,
1/BA/664:668		AAA cross-strand stack
homologous
IL_7RQB_016
NA
IL_3J9W_0821/BA/719:721,
1/BA/853:855		Isolated non-canonical cWW pair
homologous
IL_7A0S_014
IL_87907.2
IL_3J9W_0831/BA/721:725,
1/BA/846:853		tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_3J9W_0841/BA/744:745,
1/BA/810:812		Single bulged A
homologous
IL_5J7L_261
IL_31462.5
IL_3J9W_0851/BA/749:750,
1/BA/775:777		Single bulged G
homologous
IL_5J7L_262
IL_00225.13
IL_3J9W_0861/BA/750:754,
1/BA/771:775		Triple sheared
geometric
IL_4WF9_024
IL_50730.2
IL_3J9W_0871/BA/785:787,
1/BA/804:805		Major groove platform
homologous
IL_4WF9_026
IL_48076.6
IL_3J9W_0881/BA/822:824,
1/BA/834:838		Multiple bulged bases
homologous
IL_5J7L_265
IL_06549.2
IL_3J9W_0891/BA/884:885,
1/BA/986:988		Single stack bend
homologous
IL_7A0S_022
IL_90729.1
IL_3J9W_1991/BA/891:895,
1/BA/977:980		No text annotation
homologous
IL_4WF9_029
IL_06300.1
IL_3J9W_1901/BA/899:900,
1/BA/971:973		Single stack bend with bulge
geometric
IL_5TBW_101
NA
IL_3J9W_0921/BA/903:909,
1/BA/962:968		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_4WF9_031
IL_29198.2
IL_3J9W_0931/BA/909:910,
1/BA/960:962		Minor groove platform
homologous
IL_4WF9_032
IL_51454.2
IL_3J9W_1911/BA/911:915,
1/BA/956:959		C-loop
homologous
IL_4WF9_033
IL_26222.2
IL_3J9W_0951/BA/922:924,
1/BA/946:949		Minor groove platform with extra cWW
geometric
IL_7RQB_031
NA
IL_3J9W_1921/BA/922:926,
1/BA/945:949		Triple sheared
homologous
IL_5J7L_274
IL_17948.2
IL_3J9W_0961/BA/924:926,
1/BA/945:946		Minor groove platform
homologous
IL_7RQB_032
NA
IL_3J9W_0971/BA/927:928,
1/BA/942:944		Single bulged A
homologous
IL_7RQB_033
NA
IL_3J9W_0981/BA/998:1000,
1/BA/1009:1011		Isolated non-canonical cWW pair
homologous
IL_7A0S_031
IL_87907.2
IL_3J9W_0991/BA/1040:1042,
1/BA/1205:1206		Single bulged C
homologous
IL_4WF9_035
IL_61258.15
IL_3J9W_1001/BA/1044:1048,
1/BA/1199:1203		UAA/GAN
homologous
IL_7RQB_036
NA
IL_3J9W_1011/BA/1050:1057,
1/BA/1196:1197		SSU/LSU pseudoknot
homologous
IL_4WF9_037
IL_41203.4
IL_3J9W_1021/BA/1057:1059,
1/BA/1195:1196		Single bulged U
geometric
IL_5J7L_279
IL_89505.4
IL_3J9W_1031/BA/1064:1070,
1/BA/1186:1190		Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_3J9W_1041/BA/1070:1076,
1/BA/1170:1186		No text annotation
geometric
IL_4WF9_040
IL_50715.3
IL_3J9W_1051/BA/1077:1080,
1/BA/1167:1169		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
IL_57744.1
IL_3J9W_1061/BA/1089:1097,
1/BA/1154:1158		Kink-turn
homologous
IL_5J7L_284
IL_99692.2
IL_3J9W_1071/BA/1105:1108,
1/BA/1122:1125		No text annotation
IL_3J9W_1081/BA/1133:1137,
1/BA/1146:1148		No text annotation
homologous
IL_7RQB_044
NA
IL_3J9W_2001/BA/1238:1239,
1/BA/1287:1289		No text annotation
IL_3J9W_1101/BA/1243:1247,
1/BA/1279:1283		No text annotation
geometric
IL_5TBW_121
NA
IL_3J9W_1111/BA/1248:1255,
1/BA/1274:1278		Kink-turn
homologous
IL_7A0S_043
IL_70923.9
IL_3J9W_1121/BA/1259:1261,
1/BA/1268:1270		Intercalated cWW
homologous
IL_4WF9_047
IL_31737.3
IL_3J9W_1131/BA/1302:1309,
1/BA/2040:2046		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
NA
IL_3J9W_1141/BA/1349:1352,
1/BA/1648:1649		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_3J9W_1151/BA/1358:1362,
1/BA/1370:1372		C-loop
homologous
IL_7RQB_051
NA
IL_3J9W_1161/BA/1390:1394,
1/BA/1415:1419		UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_3J9W_1171/BA/1396:1400,
1/BA/1409:1413		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_3J9W_1181/BA/1448:1450,
1/BA/1637:1638		Minor groove platform
geometric
IL_4V9F_034
IL_51454.2
IL_3J9W_1191/BA/1455:1462,
1/BA/1629:1632		No text annotation
IL_3J9W_1201/BA/1463:1467,
1/BA/1625:1628		Other IL
homologous
IL_4WF9_054
IL_99646.2
IL_3J9W_1211/BA/1478:1481,
1/BA/1605:1609		No text annotation
IL_3J9W_1221/BA/1483:1486,
1/BA/1599:1603		tSH-tHW
homologous
IL_5J7L_297
IL_99646.2
IL_3J9W_1231/BA/1488:1490,
1/BA/1595:1597		Isolated non-canonical cWW pair
geometric
IL_4K31_001
IL_28037.2
IL_3J9W_1241/BA/1494:1496,
1/BA/1507:1509		Isolated non-canonical cWW pair
geometric
IL_4P3T_001
NA
IL_3J9W_1251/BA/1514:1518,
1/BA/1567:1571		No text annotation
IL_3J9W_1261/BA/1521:1524,
1/BA/1560:1564		No text annotation
IL_3J9W_1271/BA/1527:1529,
1/BA/1552:1557		No text annotation
IL_3J9W_1281/BA/1535:1537,
1/BA/1545:1546		Single bulged A
homologous
IL_5J7L_302
IL_31462.5
IL_3J9W_1291/BA/1573:1576,
1/BA/1590:1594		UAA/GAN variation
homologous
IL_5J7L_303
IL_23774.1
IL_3J9W_1301/BA/1696:1701,
1/BA/2033:2035		No text annotation
homologous
IL_4WF9_062
IL_12566.4
IL_3J9W_1311/BA/1708:1710,
1/BA/2024:2026		Isolated tWW turn
homologous
IL_5J7L_305
IL_67095.2
IL_3J9W_1321/BA/1711:1714,
1/BA/2022:2023		Major groove platform; stack outside cWW
homologous
IL_7A0S_061
IL_50694.7
IL_3J9W_1931/BA/1711:1719,
1/BA/2019:2023		No text annotation
homologous
IL_4WF9_117
IL_22854.4
IL_3J9W_1331/BA/1714:1719,
1/BA/2019:2022		Intercalated tWH
geometric
IL_4WF9_065
IL_76758.2
IL_3J9W_1341/BA/1731:1736,
1/BA/1741:1747		tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA
IL_3J9W_1351/BA/1756:1761,
1/BA/1772:1776		No text annotation
IL_3J9W_1361/BA/1799:1800,
1/BA/2009:2011		Single bulged A
homologous
IL_5J7L_312
IL_31462.5
IL_3J9W_1371/BA/1827:1833,
1/BA/1842:1850		Kink-turn related
homologous
IL_7RQB_070
NA
IL_3J9W_1381/BA/1866:1869,
1/BA/1931:1932		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_3J9W_1391/BA/1870:1871,
1/BA/1927:1930		Major groove intercalation
homologous
IL_5J7L_315
IL_82107.4
IL_3J9W_1401/BA/1875:1878,
1/BA/1922:1923		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
IL_68140.4
IL_3J9W_1411/BA/1880:1884,
1/BA/1916:1920		UAA/GAN with extra pair
homologous
IL_4WF9_073
IL_89021.2
IL_3J9W_1421/BA/1885:1889,
1/BA/1911:1915		Triple sheared
homologous
IL_7RQB_075
NA
IL_3J9W_1431/BA/1893:1896,
1/BA/1903:1907		UAA/GAN variation
homologous
IL_5J7L_317
IL_77691.5
IL_3J9W_1441/BA/1962:1963,
1/BA/1993:1996		Bulged stacked bases
homologous
IL_5J7L_318
IL_22551.3
IL_3J9W_1451/BA/1963:1974,
1/BA/1990:1993		No text annotation
geometric
IL_4WF9_077
IL_42218.2
IL_3J9W_1461/BA/2079:2081,
1/BA/2646:2647		Major groove platform
homologous
IL_4WF9_078
IL_48076.6
IL_3J9W_1471/BA/2083:2085,
1/BA/2641:2644		No text annotation
homologous
IL_4WF9_079
IL_83389.2
IL_3J9W_1481/BA/2096:2098,
1/BA/2471:2472		Single bulged U
homologous
IL_7A0S_075
IL_89505.4
IL_3J9W_1491/BA/2099:2100,
1/BA/2467:2470		Minor groove platform
homologous
IL_4WF9_081
IL_51454.2
IL_3J9W_1501/BA/2110:2112,
1/BA/2265:2268		Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_3J9W_1511/BA/2124:2126,
1/BA/2221:2223		Isolated non-canonical cWW pair
geometric
IL_5J7L_326
IL_28037.2
IL_3J9W_1521/BA/2137:2139,
1/BA/2208:2210		No text annotation
homologous
IL_7RQB_084
NA
IL_3J9W_1531/BA/2139:2149,
1/BA/2207:2208		No text annotation
IL_3J9W_1541/BA/2153:2156,
1/BA/2190:2203		No text annotation
homologous
IL_3U4M_003
IL_75283.2
IL_3J9W_1551/BA/2158:2165,
1/BA/2184:2188		Kink-turn
homologous
IL_5J7L_330
IL_70923.9
IL_3J9W_1561/BA/2231:2233,
1/BA/2249:2250		Single bulged G
geometric
IL_3NDB_004
IL_00225.13
IL_3J9W_1571/BA/2326:2328,
1/BA/2346:2350		Isolated tHS basepair with bulges
geometric
IL_4WF9_086
IL_61476.2
IL_3J9W_1581/BA/2379:2382,
1/BA/2393:2396		Double sheared
homologous
IL_5J7L_333
IL_09705.15
IL_3J9W_1591/BA/2430:2432,
1/BA/2443:2444		Single bulged U
homologous
IL_5J7L_334
IL_89505.4
IL_3J9W_1601/BA/2482:2483,
1/BA/2527:2529		Single stack bend
geometric
IL_4WF9_089
IL_26793.1
IL_3J9W_1611/BA/2483:2484,
1/BA/2525:2527		Major groove platform
homologous
IL_4WF9_090
IL_48076.6
IL_3J9W_1621/BA/2486:2488,
1/BA/2522:2523		Major groove platform
geometric
IL_4WF9_091
IL_48076.6
IL_3J9W_1631/BA/2488:2490,
1/BA/2518:2522		Major groove minor groove platform with extra cWW
homologous
IL_4WF9_092
IL_51387.2
IL_3J9W_1641/BA/2495:2499,
1/BA/2509:2513		Triple sheared
homologous
IL_5J7L_338
IL_17948.2
IL_3J9W_1651/BA/2536:2537,
1/BA/2609:2611		Major groove platform
homologous
IL_4WF9_094
IL_07039.3
IL_3J9W_1661/BA/2539:2541,
1/BA/2603:2607		Isolated non-canonical cWW with bulges
geometric
IL_7RQB_097
NA
IL_3J9W_1671/BA/2541:2542,
1/BA/2600:2603		No text annotation
homologous
IL_5J7L_341
IL_42626.2
IL_3J9W_1681/BA/2551:2552,
1/BA/2569:2572		Major groove platform with intercalation
homologous
IL_7RQB_099
NA
IL_3J9W_1691/BA/2620:2621,
1/BA/2630:2632		Single bulged A
homologous
IL_7RQB_101
NA
IL_3J9W_1701/BA/2665:2669,
1/BA/2803:2811		tSH-tHS-tHW
homologous
IL_7A0S_093
IL_04638.3
IL_3J9W_1711/BA/2681:2687,
1/BA/2692:2697		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_5J7L_346
IL_16458.4
IL_3J9W_1721/BA/2709:2713,
1/BA/2754:2756		C-loop
homologous
IL_5J7L_347
IL_63596.11
IL_3J9W_1731/BA/2716:2720,
1/BA/2747:2751		No text annotation
homologous
IL_5J7L_348
IL_23774.1
IL_3J9W_1741/BA/2724:2725,
1/BA/2740:2743		Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_3J9W_1751/BA/2766:2771,
1/BA/2791:2796		UAA/GAN with extra cWW
homologous
IL_5J7L_350
IL_49767.8
IL_3J9W_1761/BA/2863:2864,
1/BA/2903:2905		Major groove intercalation
homologous
IL_5J7L_352
IL_66635.5
IL_3J9W_1771/BA/2868:2870,
1/BA/2896:2899		No text annotation
homologous
IL_4WF9_107
IL_31531.3
IL_3J9W_1781/BA/2872:2877,
1/BA/2890:2894		tHS double platform
homologous
IL_4WF9_108
IL_70411.2
IL_3J9W_1791/BB/15:16,
1/BB/63:65		Major groove intercalation
homologous
IL_4WF9_112
IL_31462.5
IL_3J9W_1801/BB/21:27,
1/BB/53:58		No text annotation
IL_3J9W_1811/BB/28:29,
1/BB/49:52		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_3J9W_1821/BB/32:36,
1/BB/42:46		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_3J9W_1831/BB/69:77,
1/BB/95:103		Bacterial 5S Loop E
homologous
IL_7RQB_115
NA
IL_3J9W_1841/BB/78:80,
1/BB/92:94		Isolated non-canonical cWW pair
geometric
IL_5J7L_257
IL_07785.1

Problematic loops

#loop idProblemSequence
IL_3J9W_008Isolated non-canonical cWW pair
IL_3J9W_012No text annotation
IL_3J9W_029No text annotation
IL_3J9W_034Isolated non-canonical cWW pair
IL_3J9W_045No text annotation
IL_3J9W_067No text annotation
IL_3J9W_072Major groove minor groove platform with extra cWW
IL_3J9W_090No text annotation
IL_3J9W_091No text annotation
IL_3J9W_094No text annotation
IL_3J9W_109Isolated cWS basepair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3J9W_0011/AA/48:49,
1/AA/369:377,
1/AA/400:403		No text annotation
J3_3J9W_0271/AA/48:54,
1/AA/367:377,
1/AA/400:403		No text annotation
J3_3J9W_0021/AA/595:597,
1/AA/660:663,
1/AA/763:764		No text annotation
homologous
J3_5J7L_002
J3_56052.5
J3_3J9W_0281/AA/595:597,
1/AA/660:664,
1/AA/760:764		No text annotation
homologous
J3_5J7L_051
J3_17385.4
J3_3J9W_0031/AA/681:682,
1/AA/726:734,
1/AA/741:743		No text annotation
homologous
J3_5J7L_003
J3_11934.4
J3_3J9W_0041/AA/835:838,
1/AA/867:871,
1/AA/878:884		No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_3J9W_0291/AA/946:949,
1/AA/1353:1359,
1/AA/1381:1388		No text annotation
homologous
J3_4LFB_002
J3_25303.4
J3_3J9W_0051/AA/953:956,
1/AA/1244:1246,
1/AA/1346:1349		No text annotation
homologous
J3_4LFB_003
J3_52655.4
J3_3J9W_0301/AA/965:972,
1/AA/983:994,
1/AA/1230:1234		No text annotation
homologous
J3_4LFB_004
J3_83516.4
J3_3J9W_0071/AA/1000:1003,
1/AA/1055:1057,
1/AA/1219:1224		No text annotation
homologous
J3_6CZR_021
NA
J3_3J9W_0311/AA/1000:1007,
1/AA/1054:1057,
1/AA/1219:1224		No text annotation
homologous
J3_5J7L_053
J3_76475.2
J3_3J9W_0081/AA/1010:1018,
1/AA/1031:1036,
1/AA/1045:1050		No text annotation
J3_3J9W_0091/AA/1073:1078,
1/AA/1117:1123,
1/AA/1196:1202		No text annotation
homologous
J3_5J7L_008
J3_08394.3
J3_3J9W_0321/AA/1083:1084,
1/AA/1093:1096,
1/AA/1109:1112		No text annotation
homologous
J3_4LFB_017
J3_79369.1
J3_3J9W_0111/AA/1126:1128,
1/AA/1164:1167,
1/AA/1190:1193		No text annotation
homologous
J3_5J7L_010
J3_82365.4
J3_3J9W_0331/AA/1126:1128,
1/AA/1164:1170,
1/AA/1184:1193		No text annotation
homologous
J3_5J7L_054
J3_17791.2
J3_3J9W_0121/AA/1246:1250,
1/AA/1305:1312,
1/AA/1343:1346		No text annotation
homologous
J3_5J7L_011
J3_37047.6
J3_3J9W_0131/BA/30:31,
1/BA/521:528,
1/BA/555:556		No text annotation
homologous
J3_7A0S_001
J3_60031.2
J3_3J9W_0341/BA/30:31,
1/BA/521:531,
1/BA/542:556		No text annotation
homologous
J3_4WF9_011
J3_92134.2
J3_3J9W_0351/BA/32:35,
1/BA/492:508,
1/BA/515:520		No text annotation
homologous
J3_9DFE_003
J3_30040.2
J3_3J9W_0411/BA/56:57,
1/BA/70:76,
1/BA/109:113		No text annotation
homologous
J3_9DFE_004
J3_35667.2
J3_3J9W_0151/BA/272:276,
1/BA/295:302,
1/BA/416:417		No text annotation
homologous
J3_7RQB_003
NA
J3_3J9W_0361/BA/730:736,
1/BA/820:822,
1/BA/838:841		No text annotation
homologous
J3_4WF9_002
J3_64189.2
J3_3J9W_0171/BA/745:747,
1/BA/779:783,
1/BA/807:810		No text annotation
homologous
J3_4WF9_003
J3_44724.7
J3_3J9W_0181/BA/1101:1103,
1/BA/1127:1133,
1/BA/1148:1150		No text annotation
homologous
J3_5J7L_040
J3_28621.5
J3_3J9W_0191/BA/1337:1342,
1/BA/1670:1672,
1/BA/1684:1687		No text annotation
homologous
J3_7RQB_007
NA
J3_3J9W_0201/BA/1344:1348,
1/BA/1650:1656,
1/BA/1665:1668		No text annotation
homologous
J3_4WF9_005
J3_68164.1
J3_3J9W_0371/BA/1383:1389,
1/BA/1420:1424,
1/BA/1441:1442		No text annotation
homologous
J3_4WF9_016
J3_31965.2
J3_3J9W_0381/BA/1470:1475,
1/BA/1612:1613,
1/BA/1616:1622		No text annotation
homologous
J3_7A0S_019
J3_34864.2
J3_3J9W_0211/BA/2120:2122,
1/BA/2225:2230,
1/BA/2251:2257		No text annotation
homologous
J3_4WF9_007
J3_07703.1
J3_3J9W_0391/BA/2311:2313,
1/BA/2413:2424,
1/BA/2450:2456		No text annotation
homologous
J3_5J7L_070
J3_20992.1
J3_3J9W_0221/BA/2324:2326,
1/BA/2350:2352,
1/BA/2361:2366		No text annotation
homologous
J3_4WF9_008
J3_61124.2
J3_3J9W_0231/BA/2546:2549,
1/BA/2574:2576,
1/BA/2590:2596		No text annotation
homologous
J3_5J7L_046
J3_32601.5
J3_3J9W_0401/BA/2818:2820,
1/BA/2831:2836,
1/BA/2914:2918		No text annotation
homologous
J3_4WF9_020
J3_24127.1
J3_3J9W_0251/BA/2839:2840,
1/BA/2856:2861,
1/BA/2907:2911		No text annotation
homologous
J3_7A0S_013
J3_76911.2
J3_3J9W_0261/BB/9:14,
1/BB/66:68,
1/BB/104:107		No text annotation
J4_3J9W_0011/AA/113:121,
1/AA/246:248,
1/AA/294:297,
1/AA/319:320		No text annotation
J4_3J9W_0021/AA/141:143,
1/AA/177:184,
1/AA/205:212,
1/AA/227:229		No text annotation
J4_3J9W_0031/AA/584:586,
1/AA/773:778,
1/AA/819:830,
1/AA/889:890		No text annotation
homologous
J4_4LFB_003
J4_61885.6
J4_3J9W_0041/AX/7:10,
1/AX/25:27,
1/AX/43:49,
1/AX/65:66		tRNA junction
homologous
J4_5E81_027
J4_70449.27
J4_3J9W_0051/BA/271:272,
1/BA/417:422,
1/BA/446:453,
1/BA/468:471		No text annotation
homologous
J4_4WF9_001
J4_45801.6
J4_3J9W_0061/BA/340:344,
1/BA/360:363,
1/BA/367:369,
1/BA/381:385		No text annotation
homologous
J4_4WF9_002
J4_71729.5
J4_3J9W_0071/BA/645:648,
1/BA/670:674,
1/BA/681:684,
1/BA/696:703		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_3J9W_0081/BA/1310:1315,
1/BA/1333:1334,
1/BA/1690:1693,
1/BA/2038:2039		No text annotation
homologous
J4_4WF9_004
J4_64571.5
J4_3J9W_0091/BA/1349:1353,
1/BA/1377:1382,
1/BA/1443:1444,
1/BA/1642:1649		No text annotation
homologous
J4_4WF9_005
J4_69051.6
J4_3J9W_0101/BA/1352:1353,
1/BA/1377:1382,
1/BA/1443:1444,
1/BA/1642:1648		No text annotation
homologous
J4_4WF9_006
J4_10313.5
J4_3J9W_0111/BA/1490:1492,
1/BA/1511:1513,
1/BA/1572:1573,
1/BA/1594:1595		No text annotation
J4_3J9W_0121/BA/1801:1805,
1/BA/1817:1821,
1/BA/1856:1859,
1/BA/2004:2008		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_3J9W_0131/BA/1862:1864,
1/BA/1934:1935,
1/BA/1953:1962,
1/BA/1996:2001		No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_3J9W_0141/BA/2314:2318,
1/BA/2372:2376,
1/BA/2399:2401,
1/BA/2410:2412		No text annotation
homologous
J4_9DFE_009
J4_04930.6
J4_3J9W_0151/BA/2672:2675,
1/BA/2703:2705,
1/BA/2760:2764,
1/BA/2798:2800		No text annotation
homologous
J4_9DFE_010
J4_77044.4
J5_3J9W_0011/AA/38:41,
1/AA/411:414,
1/AA/444:447,
1/AA/507:509,
1/AA/554:557		No text annotation
J5_3J9W_0021/AA/60:63,
1/AA/104:111,
1/AA/322:324,
1/AA/345:347,
1/AA/358:362		No text annotation
homologous
J5_5J7L_003
J5_59910.6
J5_3J9W_0031/BA/47:54,
1/BA/115:120,
1/BA/129:130,
1/BA/149:151,
1/BA/178:180		No text annotation
homologous
J5_4WF9_001
J5_01737.2
J5_3J9W_0041/BA/271:276,
1/BA/295:302,
1/BA/416:422,
1/BA/446:453,
1/BA/468:471		No text annotation
J5_3J9W_0051/BA/577:579,
1/BA/604:608,
1/BA/621:623,
1/BA/1301:1302,
1/BA/2046:2047		No text annotation
homologous
J5_5J7L_014
J5_43153.5
J5_3J9W_0061/BA/628:633,
1/BA/715:718,
1/BA/856:859,
1/BA/1236:1237,
1/BA/1290:1296		No text annotation
homologous
J5_7A0S_004
J5_74302.5
J5_3J9W_0071/BA/1719:1727,
1/BA/1751:1752,
1/BA/1780:1781,
1/BA/1785:1793,
1/BA/2017:2019		No text annotation
homologous
J5_4WF9_005
J5_62523.6
J5_3J9W_0081/BA/2086:2093,
1/BA/2475:2482,
1/BA/2529:2535,
1/BA/2612:2617,
1/BA/2635:2640		No text annotation
J5_3J9W_0091/BA/2103:2106,
1/BA/2272:2275,
1/BA/2287:2288,
1/BA/2310:2311,
1/BA/2456:2464		No text annotation
homologous
J5_4WF9_007
J5_39529.1
J6_3J9W_0011/BA/45:46,
1/BA/181:187,
1/BA/215:227,
1/BA/234:238,
1/BA/265:269,
1/BA/473:480		No text annotation
J6_3J9W_0021/BA/2103:2106,
1/BA/2272:2275,
1/BA/2287:2288,
1/BA/2310:2313,
1/BA/2413:2424,
1/BA/2450:2464		No text annotation
J7_3J9W_0031/BA/8:15,
1/BA/571:577,
1/BA/2047:2052,
1/BA/2069:2072,
1/BA/2654:2659,
1/BA/2817:2818,
1/BA/2918:2919		No text annotation
J7_3J9W_0021/BA/864:869,
1/BA/882:883,
1/BA/989:992,
1/BA/1017:1022,
1/BA/1033:1037,
1/BA/1209:1210,
1/BA/1226:1231		No text annotation

Problematic loops

#loop idProblemSequence
J3_3J9W_006No text annotation
J3_3J9W_010No text annotation
J3_3J9W_014No text annotation
J3_3J9W_016No text annotation
J3_3J9W_024No text annotation
J7_3J9W_001No text annotation

Coloring options:
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