HL_3J9W_072

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAUUGGAUAU

Length

12 nucleotides

Bulged bases

3J9W|1|BA|A|1499, 3J9W|1|BA|U|1500, 3J9W|1|BA|A|1506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93910.1

Basepair signature

cWW-R-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

3J9W|1|BA|G|1496
3J9W|1|BA|G|1497
3J9W|1|BA|U|1498
3J9W|1|BA|A|1499
3J9W|1|BA|U|1500
3J9W|1|BA|U|1501
3J9W|1|BA|G|1502
3J9W|1|BA|G|1503
3J9W|1|BA|A|1504
3J9W|1|BA|U|1505
3J9W|1|BA|A|1506
3J9W|1|BA|U|1507

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein bL17