HL_3J9W_086

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

3J9W|1|BA|A|2059, 3J9W|1|BA|A|2060, 3J9W|1|BA|G|2061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90168.1

Basepair signature

cWW-R-R-tWH-R

Number of instances in this motif group

14

Unit IDs

3J9W|1|BA|G|2056
3J9W|1|BA|U|2057
3J9W|1|BA|G|2058
3J9W|1|BA|A|2059
3J9W|1|BA|A|2060
3J9W|1|BA|G|2061
3J9W|1|BA|A|2062
3J9W|1|BA|U|2063
3J9W|1|BA|G|2064
3J9W|1|BA|C|2065

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein bL32

Chain BE

50S ribosomal protein uL3

Chain BU

50S ribosomal protein bL21