HL_3J9W_108

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAACAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9W_108 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2978

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

3J9W|1|BA|G|1023
3J9W|1|BA|G|1024
3J9W|1|BA|A|1025
3J9W|1|BA|A|1026
3J9W|1|BA|A|1027
3J9W|1|BA|C|1028
3J9W|1|BA|A|1029
3J9W|1|BA|G|1030
3J9W|1|BA|C|1031
3J9W|1|BA|C|1032

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein uL30

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BT

50S ribosomal protein bL20