HL_3J9W_109

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGCUCGUCC

Length

9 nucleotides

Bulged bases

3J9W|1|BA|C|1364, 3J9W|1|BA|U|1368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9W_109 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3241

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

3J9W|1|BA|G|1362
3J9W|1|BA|G|1363
3J9W|1|BA|C|1364
3J9W|1|BA|U|1365
3J9W|1|BA|C|1366
3J9W|1|BA|G|1367
3J9W|1|BA|U|1368
3J9W|1|BA|C|1369
3J9W|1|BA|C|1370

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein bL17

Chain BV

50S ribosomal protein uL22