HL_3J9Y_027
3D structure
- PDB id
- 3J9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGUAAUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J9Y_027 not in the Motif Atlas
- Homologous match to HL_6PRV_002
- Geometric discrepancy: 0.2078
- The information below is about HL_6PRV_002
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_81538.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
3J9Y|1|A|C|1092
3J9Y|1|A|G|1093
3J9Y|1|A|U|1094
3J9Y|1|A|A|1095
3J9Y|1|A|A|1096
3J9Y|1|A|U|1097
3J9Y|1|A|A|1098
3J9Y|1|A|G|1099
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain I
- 50S ribosomal protein L11
- Chain w
- Tetracycline resistance protein TetM
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