HL_3J9Y_029

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Y_029 not in the Motif Atlas

Homologous match to HL_5J7L_164

Geometric discrepancy: 0.1471

The information below is about HL_5J7L_164

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_87030.3

Basepair signature

cWW-F-F

Number of instances in this motif group

30

Unit IDs

3J9Y|1|A|U|1222
3J9Y|1|A|G|1223
3J9Y|1|A|U|1224
3J9Y|1|A|G|1225
3J9Y|1|A|A|1226
3J9Y|1|A|G|1227

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain Q

50S ribosomal protein L20

Chain R

50S ribosomal protein L21