HL_3J9Y_029
3D structure
- PDB id
- 3J9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGUGAG
- Length
- 6 nucleotides
- Bulged bases (A, C, G, U)
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J9Y_029 not in the Motif Atlas
- Homologous match to HL_5J7L_164
- Geometric discrepancy: 0.1471
- The information below is about HL_5J7L_164
- Detailed Annotation
- Other HL
- Broad Annotation
- Other HL
- Motif group
- HL_87030.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 30
Unit IDs
3J9Y|1|A|U|1222
3J9Y|1|A|G|1223
3J9Y|1|A|U|1224
3J9Y|1|A|G|1225
3J9Y|1|A|A|1226
3J9Y|1|A|G|1227
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
Coloring options: