HL_3J9Y_043
3D structure
- PDB id
- 3J9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 3J9Y|1|A|A|1780, 3J9Y|1|A|U|1781, 3J9Y|1|A|U|1782, 3J9Y|1|A|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J9Y_043 not in the Motif Atlas
- Homologous match to HL_4WF9_043
- Geometric discrepancy: 0.096
- The information below is about HL_4WF9_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
3J9Y|1|A|U|1777
3J9Y|1|A|U|1778
3J9Y|1|A|U|1779
3J9Y|1|A|A|1780
3J9Y|1|A|U|1781
3J9Y|1|A|U|1782
3J9Y|1|A|A|1783
3J9Y|1|A|A|1784
3J9Y|1|A|A|1785
3J9Y|1|A|A|1786
3J9Y|1|A|A|1787
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
Coloring options: