HL_3J9Y_046
3D structure
- PDB id
- 3J9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- G(PSU)AAC(3TD)A(PSU)AAC
- Length
- 11 nucleotides
- Bulged bases
- 3J9Y|1|A|A|1913, 3J9Y|1|A|C|1914, 3J9Y|1|A|A|1916
- QA status
- Modified nucleotides: PSU, 3TD
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J9Y_046 not in the Motif Atlas
- Homologous match to HL_5J7L_181
- Geometric discrepancy: 0.0823
- The information below is about HL_5J7L_181
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25847.2
- Basepair signature
- cWW-F-cSH-tHW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
3J9Y|1|A|G|1910
3J9Y|1|A|PSU|1911
3J9Y|1|A|A|1912
3J9Y|1|A|A|1913
3J9Y|1|A|C|1914
3J9Y|1|A|3TD|1915
3J9Y|1|A|A|1916
3J9Y|1|A|PSU|1917
3J9Y|1|A|A|1918
3J9Y|1|A|A|1919
3J9Y|1|A|C|1920
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain v
- Transfer RNA; tRNA
- Chain w
- Tetracycline resistance protein TetM
- Chain x
- mRNA
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