HL_3J9Y_052

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

3J9Y|1|A|A|2268, 3J9Y|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Y_052 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0748

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

3J9Y|1|A|C|2264
3J9Y|1|A|U|2265
3J9Y|1|A|A|2266
3J9Y|1|A|A|2267
3J9Y|1|A|A|2268
3J9Y|1|A|G|2269
3J9Y|1|A|A|2270
3J9Y|1|A|G|2271
3J9Y|1|A|U|2272
3J9Y|1|A|A|2273
3J9Y|1|A|A|2274
3J9Y|1|A|C|2275
3J9Y|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27